Variables
	chm = rosetta.core.chemical.ChemicalManager.get_instance()

	rts = chm.residue_type_set('fa_standard').get_self_ptr()

	score_fxn = get_score_function()

	lower = conformation.ResidueFactory.create_residue(rts.name_map("isoprene:terpene_lower_full"))

	inner = conformation.ResidueFactory.create_residue(rts.name_map("isoprene"))

	upper = conformation.ResidueFactory.create_residue(rts.name_map("isoprene:terpene_upper_full"))

int	i = ii + 1

tuple	before_score = ( *score_fxn )( pose )

	mcpose = Pose(pose)

	naccept

	nthermal

	nreject

	resi = int(numeric.random.rg().uniform() * pose.total_residue() + 1)

	tori = int(numeric.random.rg().uniform() * (pose.residue(resi).mainchain_torsions().size() - 1) + 2)

	torval

	mcscore

	pose = mcpose

	min = MinMover(mm, score_fxn, "lbfgs_armijo_nonmonotone", 0.01, True)

Variable Documentation

◆ before_score

test_terpenes.before_score = ( *score_fxn )( pose )

◆ chm

test_terpenes.chm = rosetta.core.chemical.ChemicalManager.get_instance()

◆ i

int test_terpenes.i = ii + 1

◆ inner

test_terpenes.inner = conformation.ResidueFactory.create_residue(rts.name_map("isoprene"))

Referenced by bind_T15_inner_class_fwd(), dna_stats(), main(), numeric::random::mt19937_RG.period_certification(), and zf_relax_test().

◆ lower

test_terpenes.lower = conformation.ResidueFactory.create_residue(rts.name_map("isoprene:terpene_lower_full"))

Referenced by numeric::random.binary_search_cdf(), numeric::geometry::hashing::SixDCoordinateBinner.bounding_volume_from_index(), numeric::interpolation::Histogram< X, Y >.derivative_linear(), erraser_wrapper.erraser_minimize(), erraser_util.extract_pdb(), detail.fallback_format(), numeric::kdtree.get_percentile_bounds(), numeric::kdtree.hr_intersects_hs(), numeric::interpolation::Histogram< X, Y >.interpolate_linear(), setup_for_complex_scoring_general.main(), main(), detail::bigint.multiply(), numeric::kdtree.nearest_neighbor(), erraser_util.rna_rosetta_ready_set(), erraser_wrapper.seq_rebuild_new(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.set_energy_range(), erraser_wrapper.SWA_rebuild_erraser(), numeric::kdtree.transform_percentile(), and numeric::kdtree.transform_percentile_single_pt().

◆ mcpose

test_terpenes.mcpose = Pose(pose)

◆ mcscore

test_terpenes.mcscore

◆ min

test_terpenes.min = MinMover(mm, score_fxn, "lbfgs_armijo_nonmonotone", 0.01, True)

◆ naccept

test_terpenes.naccept

Referenced by doit().

◆ nreject

test_terpenes.nreject

◆ nthermal

test_terpenes.nthermal

◆ pose

test_terpenes.pose = mcpose

◆ resi

test_terpenes.resi = int(numeric.random.rg().uniform() * pose.total_residue() + 1)

◆ rts

test_terpenes.rts = chm.residue_type_set('fa_standard').get_self_ptr()

◆ score_fxn

test_terpenes.score_fxn = get_score_function()

◆ tori

test_terpenes.tori = int(numeric.random.rg().uniform() * (pose.residue(resi).mainchain_torsions().size() - 1) + 2)

◆ torval

test_terpenes.torval

◆ upper

test_terpenes.upper = conformation.ResidueFactory.create_residue(rts.name_map("isoprene:terpene_upper_full"))

Referenced by numeric::random.binary_search_cdf(), numeric::geometry::hashing::SixDCoordinateBinner.bounding_volume_from_index(), numeric::interpolation::Histogram< X, Y >.derivative_linear(), detail.fallback_format(), detail.format_uint(), numeric::kdtree.get_percentile_bounds(), numeric::kdtree.hr_intersects_hs(), numeric::interpolation::Histogram< X, Y >.interpolate_linear(), arls_impl.main(), pdb_to_molfile.main(), sidechain_cst_3.main(), main(), detail::bigint.multiply(), numeric::kdtree.nearest_neighbor(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.set_energy_range(), detail.to_nonnegative_int(), numeric::kdtree.transform_percentile(), and numeric::kdtree.transform_percentile_single_pt().

Variables