FragmentBasedDesign Class Reference

Inheritance diagram for FragmentBasedDesign:

Public Types
typedef core::pose::Pose	Pose
typedef core::pose::PoseOP	PoseOP
typedef protocols::frag_picker::FragmentPicker	FragmentPicker
typedef protocols::frag_picker::FragmentPickerOP	FragmentPickerOP
typedef core::sequence::SequenceProfile	SequenceProfile
typedef core::sequence::SequenceProfileOP	SequenceProfileOP

Public Member Functions
	FragmentBasedDesign (utility::file::FileName seqprof, utility::file::FileName vall)
virtual void	apply (Pose &pose)
virtual std::string	get_name () const

Public Attributes
FragmentPickerOP	picker_

Member Typedef Documentation

FragmentPicker

typedef protocols::frag_picker::FragmentPicker FragmentBasedDesign::FragmentPicker

FragmentPickerOP

typedef protocols::frag_picker::FragmentPickerOP FragmentBasedDesign::FragmentPickerOP

Pose

typedef core::pose::Pose FragmentBasedDesign::Pose

PoseOP

typedef core::pose::PoseOP FragmentBasedDesign::PoseOP

SequenceProfile

typedef core::sequence::SequenceProfile FragmentBasedDesign::SequenceProfile

SequenceProfileOP

typedef core::sequence::SequenceProfileOP FragmentBasedDesign::SequenceProfileOP

Constructor & Destructor Documentation

FragmentBasedDesign()

FragmentBasedDesign::FragmentBasedDesign ( utility::file::FileName  seqprof, utility::file::FileName  vall  )

inline

Member Function Documentation

apply()

virtual void FragmentBasedDesign::apply ( Pose &  pose )

inlinevirtual

References beta_nonlocal::pose, and basic::options::OptionKeys::relax::sequence.

Referenced by pyrosetta.bindings.scores.simple_metrics.SimpleMetricDataAccessorBase::__setitem__(), pyrosetta.bindings.scores.base.PoseCacheAccessorBase::_maybe_delete_keys_from_sm_data(), and pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

get_name()

virtual std::string FragmentBasedDesign::get_name ( ) const

inlinevirtual

Member Data Documentation

picker_

FragmentPickerOP FragmentBasedDesign::picker_

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The documentation for this class was generated from the following file:

• src/apps/pilot/javierbq/fragment_based_design.cc