backbone_tests.cc File Reference

#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/loop_modeling/LoopMover.hh>
#include <protocols/kinematic_closure/ClosureProblem.hh>
#include <protocols/kinematic_closure/ClosureSolution.hh>
#include <protocols/kinematic_closure/BalancedKicMover.hh>
#include <protocols/kinematic_closure/perturbers/Perturber.hh>
#include <protocols/kinematic_closure/perturbers/RamaPerturber.hh>
#include <protocols/kinematic_closure/perturbers/UniformPerturber.hh>
#include <protocols/kinematic_closure/perturbers/VicinityPerturber.hh>
#include <protocols/kinematic_closure/perturbers/WalkingPerturber.hh>
#include <protocols/kinematic_closure/pivot_pickers/PivotPicker.hh>
#include <protocols/kinematic_closure/pivot_pickers/FixedPivots.hh>
#include <protocols/kinematic_closure/solution_pickers/FilteredSolutions.hh>
#include <protocols/kinematic_closure/solution_pickers/RandomSolutions.hh>
#include <protocols/simple_moves/sidechain_moves/SidechainMover.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/backrub.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/pointer/access_ptr.hh>
#include <numeric/random/random.hh>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <limits>
#include <algorithm>
#include <cmath>
#include <unistd.h>
#include <sys/stat.h>
#include <sys/types.h>

Classes
class	ClosureMover
class	BreadthMover
class	SamplingManager
class	OutputManager

Typedefs
typedef utility::pointer::owning_ptr< ClosureMover >	ClosureMoverOP
typedef utility::pointer::owning_ptr< ClosureMover const >	ClosureMoverCOP
typedef utility::pointer::owning_ptr< BreadthMover >	BreadthMoverOP
typedef utility::pointer::owning_ptr< BreadthMover const >	BreadthMoverCOP

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.kale.monte_carlo")

Typedef Documentation

BreadthMoverCOP

typedef utility::pointer::owning_ptr<BreadthMover const> BreadthMoverCOP

BreadthMoverOP

typedef utility::pointer::owning_ptr<BreadthMover> BreadthMoverOP

ClosureMoverCOP

typedef utility::pointer::owning_ptr<ClosureMover const> ClosureMoverCOP

ClosureMoverOP

typedef utility::pointer::owning_ptr<ClosureMover> ClosureMoverOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, dump_pose(), SamplingManager::get_iterations(), create_a3b_hbs::i, basic::init(), autocorrelation::iterations, NEW_OPT, bin_torsions::output, kic_runner::pdb, run_backbone::pivots, basic::options::quiet, basic::options::OptionKeys::dna::specificity::score_function, SamplingManager::setup(), local::temperature, and SamplingManager::update().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.kale.monte_carlo") ( "apps.pilot.kale.monte_carlo"  )

static