sim_cryo.cc File Reference

An app that will somewhat poorly simmulate cryoEM data. More...

#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/testing.OptionKeys.gen.hh>
#include <basic/options/keys/cryst.OptionKeys.gen.hh>
#include <core/chemical/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/PDBPoseMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID.hh>
#include <core/pose/util.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <devel/init.hh>
#include <numeric/random/random.hh>
#include <numeric/UniformRotationSampler.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <ObjexxFCL/format.hh>
#include <protocols/electron_density/util.hh>
#include <core/types.hh>
#include <protocols/electron_density/PerlinNoise.hh>
#include <iostream>
#include <iosfwd>
#include <fstream>
#include <string>
#include <algorithm>
#include <cstdlib>
#include <memory>
#include <time.h>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>

Classes
class	SimulateCryoMover

Functions
void	set_options (SimulateCryoMover &GIFP)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("sim_cryo")

Detailed Description

An app that will somewhat poorly simmulate cryoEM data.

Author

Danny Farrell

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References SimulateCryoMover::apply(), argv, test.T009_Exceptions::e, basic::init(), NEW_OPT, basic::options::option, pyrosetta.distributed.io::pose_from_file(), basic::options::OptionKeys::in::file::s, and set_options().

set_options()

void set_options

(

SimulateCryoMover &

GIFP

)

References basic::options::OptionKeys::testing::INTEGRATION_TEST, basic::options::option, SimulateCryoMover::set_box_size_multiplier(), SimulateCryoMover::set_gauss_multiplier(), SimulateCryoMover::set_gauss_offset(), SimulateCryoMover::set_integration_test(), SimulateCryoMover::set_noise_range(), SimulateCryoMover::set_NR(), SimulateCryoMover::set_perlin_noise_multiplier(), SimulateCryoMover::set_perlin_noise_offset(), SimulateCryoMover::set_pixel_size(), and SimulateCryoMover::set_resolution().

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("sim_cryo") ( "sim_cryo"  )

static