Rosetta
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mdsmith, sthyme More...
#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/dna/setup.hh>
#include <protocols/dna/RestrictDesignToProteinDNAInterface.hh>
#include <protocols/motifs/LigandMotifSearch.hh>
#include <protocols/motifs/LigandMotifSearch.fwd.hh>
#include <protocols/motifs/MotifLibrary.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/motifs/Motif.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/rms_util.hh>
#include <protocols/dna/PDBOutput.hh>
#include <protocols/dna/util.hh>
#include <protocols/motifs/motif_utils.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/excn/Exceptions.hh>
#include <fstream>
#include <iostream>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/keys/motifs.OptionKeys.gen.hh>
Functions | |
void | remove_duplicate_motifs () |
int | main (int argc, char *argv[]) |
Variables | |
static basic::Tracer | ms_tr ("apps.public.remove_duplicate_motifs") |
mdsmith, sthyme
int main | ( | int | argc, |
char * | argv[] | ||
) |
void remove_duplicate_motifs | ( | ) |
References build_jacobian::distance, basic::options::OptionKeys::motifs::duplicate_angle_cutoff, basic::options::OptionKeys::motifs::duplicate_dist_cutoff, utility::file::file_exists(), motifs, ms_tr, basic::options::option, basic::options::OptionKeys::motifs::output_file, beta_nonlocal::pose, basic::options::OptionKeys::frags::scoring::scoring, and basic::options::OptionKeys::inout::dbms::user.
Referenced by main().
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static |
Referenced by main(), and remove_duplicate_motifs().