mdsmith, sthyme More...

#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/dna/setup.hh>
#include <protocols/dna/RestrictDesignToProteinDNAInterface.hh>
#include <protocols/motifs/LigandMotifSearch.hh>
#include <protocols/motifs/LigandMotifSearch.fwd.hh>
#include <protocols/motifs/MotifLibrary.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/motifs/Motif.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/rms_util.hh>
#include <protocols/dna/PDBOutput.hh>
#include <protocols/dna/util.hh>
#include <protocols/motifs/motif_utils.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/excn/Exceptions.hh>
#include <fstream>
#include <iostream>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/keys/motifs.OptionKeys.gen.hh>

Functions
void	remove_duplicate_motifs ()

int	main (int argc, char *argv[])

Variables
static basic::Tracer	ms_tr ("apps.public.remove_duplicate_motifs")

Detailed Description

mdsmith, sthyme

Function Documentation

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), basic::options::OptionKeys::motifs::list_motifs, basic::options::OptionKeys::motifs::motif_filename, ms_tr, option, basic::prof_reset(), remove_duplicate_motifs(), and basic::options::OptionKeys::inout::dbms::user.

◆ remove_duplicate_motifs()

void remove_duplicate_motifs ( )

References build_jacobian::distance, basic::options::OptionKeys::motifs::duplicate_angle_cutoff, basic::options::OptionKeys::motifs::duplicate_dist_cutoff, utility::file::file_exists(), motifs, ms_tr, basic::options::option, basic::options::OptionKeys::motifs::output_file, beta_nonlocal::pose, basic::options::OptionKeys::frags::scoring::scoring, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

◆ ms_tr

basic::Tracer ms_tr("apps.public.remove_duplicate_motifs") ( "apps.public.remove_duplicate_motifs" )

static

Referenced by main(), and remove_duplicate_motifs().