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Rosetta
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#include <protocols/jobdist/JobDistributors.hh>#include <protocols/jobdist/Jobs.hh>#include <protocols/jd2/Job.hh>#include <core/kinematics/util.hh>#include <protocols/moves/Mover.hh>#include <protocols/moves/MoverContainer.hh>#include <protocols/abinitio/FragmentMover.hh>#include <protocols/abinitio/SmoothFragmentMover.hh>#include <protocols/abinitio/GunnCost.hh>#include <protocols/relax/util.hh>#include <protocols/abinitio/AbrelaxMover.hh>#include <protocols/jumping/SecondaryStructure.hh>#include <core/types.hh>#include <core/pose/Pose.hh>#include <core/pose/util.hh>#include <devel/init.hh>#include <basic/MetricValue.hh>#include <basic/options/option.hh>#include <basic/options/keys/abinitio.OptionKeys.gen.hh>#include <basic/options/keys/constraints.OptionKeys.gen.hh>#include <basic/options/keys/evaluation.OptionKeys.gen.hh>#include <basic/options/keys/filters.OptionKeys.gen.hh>#include <basic/options/keys/frags.OptionKeys.gen.hh>#include <basic/options/keys/in.OptionKeys.gen.hh>#include <basic/options/keys/jumps.OptionKeys.gen.hh>#include <basic/options/keys/loopfcst.OptionKeys.gen.hh>#include <basic/options/keys/loops.OptionKeys.gen.hh>#include <basic/options/keys/out.OptionKeys.gen.hh>#include <basic/options/keys/run.OptionKeys.gen.hh>#include <basic/options/keys/templates.OptionKeys.gen.hh>#include <basic/options/after_opts.hh>#include <basic/options/option_macros.hh>#include <core/fragment/ConstantLengthFragSet.hh>#include <core/fragment/BBTorsionSRFD.hh>#include <core/fragment/util.hh>#include <core/fragment/FragmentIO.hh>#include <core/chemical/ChemicalManager.hh>#include <core/conformation/util.hh>#include <core/io/silent/SilentFileData.hh>#include <core/scoring/constraints/ConstraintSet.hh>#include <core/scoring/constraints/ConstraintIO.hh>#include <core/scoring/constraints/util.hh>#include <core/scoring/constraints/NamedAtomPairConstraint.hh>#include <core/scoring/ScoreFunction.fwd.hh>#include <core/scoring/ScoreType.hh>#include <core/scoring/ScoreFunctionFactory.hh>#include <core/scoring/rms_util.hh>#include <core/scoring/constraints/BoundConstraint.hh>#include <protocols/pose_metric_calculators/ClashCountCalculator.hh>#include <core/io/pdb/pdb_writer.hh>#include <core/io/silent/silent.fwd.hh>#include <core/io/silent/SilentStructFactory.hh>#include <core/sequence/util.hh>#include <protocols/evaluation/PoseEvaluator.hh>#include <protocols/evaluation/RmsdEvaluator.hh>#include <protocols/evaluation/JumpEvaluator.hh>#include <protocols/evaluation/TimeEvaluator.hh>#include <protocols/evaluation/PCA.hh>#include <protocols/evaluation/PoseMetricEvaluator.hh>#include <protocols/evaluation/ConstraintEvaluator.hh>#include <protocols/evaluation/util.hh>#include <protocols/evaluation/ChemicalShiftEvaluator.hh>#include <protocols/loops/SlidingWindowLoopClosure.hh>#include <protocols/loops/WidthFirstSlidingWindowLoopClosure.hh>#include <protocols/loops/Loops.hh>#include <protocols/loops/LoopMover.hh>#include <protocols/loops/util.hh>#include <protocols/idealize.hh>#include <protocols/filters/Filter.hh>#include <protocols/simple_filters/RGFilter.hh>#include <protocols/simple_filters/COFilter.hh>#include <protocols/simple_filters/SheetFilter.hh>#include <protocols/jd2/JobDistributor.hh>#include <protocols/jd2/JobOutputter.hh>#include <protocols/moves/MoverStatus.hh>#include <numeric/random/random.hh>#include <utility/io/izstream.hh>#include <utility/vector1.hh>#include <basic/Tracer.hh>#include <utility/io/util.hh>#include <utility/exit.hh>#include <utility/excn/Exceptions.hh>#include <cstdlib>#include <string>#include <vector>#include <protocols/topology_broker/TopologyBroker.hh>#include <protocols/topology_broker/util.hh>#include <protocols/topology_broker/FragmentClaimer.hh>#include <protocols/topology_broker/JumpClaimer.hh>#include <protocols/topology_broker/SequenceClaimer.hh>#include <protocols/topology_broker/RigidChunkClaimer.hh>#include <protocols/topology_broker/ConstraintClaimer.hh>#include <protocols/topology_broker/LoopFragmentClaimer.hh>#include <protocols/topology_broker/CutBiasClaimer.hh>#include <protocols/abinitio/FragmentSampler.hh>#include <protocols/abinitio/ConstraintFragmentSampler.hh>Classes | |
| class | TestJD2Mover |
Typedefs | |
| typedef utility::pointer::owning_ptr< TestJD2Mover > | TestJD2MoverOP |
| typedef utility::pointer::owning_ptr< TestJD2Mover const > | TestJD2MoverCOP |
Functions | |
| void | run () |
| int | main (int argc, char *argv[]) |
| =============================== MAIN ============================================================ More... | |
| typedef utility::pointer::owning_ptr< TestJD2Mover const > TestJD2MoverCOP |
| typedef utility::pointer::owning_ptr< TestJD2Mover > TestJD2MoverOP |
| int main | ( | int | argc, |
| char * | argv[] | ||
| ) |
=============================== MAIN ============================================================
References argv, test.T009_Exceptions::e, basic::init(), and run().
| void run | ( | ) |
References basic::options::OptionKeys::in::path::database, basic::options::option, and basic::options::OptionKeys::inout::dbms::user.
Referenced by main().