make_profile.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/char.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/random/random.hh>
#include <map>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Functions
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, count, test.T009_Exceptions::e, end, ObjexxFCL::format::F(), in::file::fasta(), basic::init(), subloop_histogram::iterator, option, erraser_single_res_analysis::out, legacy_score_vs_rmsd::scores, out::file::silent(), challenge::ss, and basic::options::OptionKeys::mp::visualize::width.