prof_search.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/ScoringSchemeFactory.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/char.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/random/random.hh>
#include <map>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/sequence/ScoringScheme.hh>
#include <protocols/jobdist/Jobs.hh>
#include <ObjexxFCL/format.hh>
#include <utility/excn/Exceptions.hh>

Classes
class	SequenceProfileDB

Functions
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References out::file::alignment(), argv, utility::io::oc::cout, test.T009_Exceptions::e, SequenceProfileDB::get_next_profile(), SequenceProfileDB::has_another_profile(), basic::init(), option, bin_torsions::output, frags::scoring::profile_score(), in::file::pssm(), and challenge::ss.