fragpdb.cc File Reference

#include <basic/options/keys/lh.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <protocols/loophash/LoopHashLibrary.fwd.hh>
#include <protocols/loophash/LoopHashLibrary.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/annotated_sequence.hh>
#include <iostream>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <devel/init.hh>
#include <boost/lexical_cast.hpp>

Functions
void	output_pdb (std::vector< BackboneSegment > &bs_vec_, core::Size loopsize, std::string out_path, std::string prefix)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("main")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::lh::fragpdb::bin, test.T009_Exceptions::e, create_a3b_hbs::i, basic::options::OptionKeys::lh::fragpdb::indexoffset, basic::init(), basic::options::key(), loop_hash_library, basic::options::OptionKeys::lh::loopsizes, basic::options::option, basic::options::OptionKeys::lh::fragpdb::out_path, output_pdb(), utility::to_string(), and basic::options::TR.

output_pdb()

void output_pdb	(	std::vector< BackboneSegment > &	bs_vec_,
		core::Size	loopsize,
		std::string	out_path,
		std::string	prefix
	)

References numeric::kinematic_closure::frame(), create_a3b_hbs::i, basic::options::OptionKeys::lh::fragpdb::out_path, make_symmdef_file_denovo::pos, create_a3b_hbs::prefix, basic::options::OptionKeys::in::file::residue_type_set, basic::options::OptionKeys::relax::sequence, and utility::to_string().

Referenced by align_pdbs_function(), devel_main(), doit(), double_helix_test(), helix_ST(), main(), minimize_and_score(), protocols_main(), rna_resample_test(), and setup_pose_setup_class().

Variable Documentation

TR

basic::Tracer TR("main") ( "main"  )

static