calc_pair_matrix.m File Reference

Variables
	function [matrix]
	all = sum(na)
	p_a = na / all
	papa = p_a' * p_a
	paa = pair / all
	matrix = paa ./ papa

Variable Documentation

all

all = sum(na)

Referenced by job_manager.MoveStatsWindow::__init__(), pyrosetta.distributed.cluster.converters::_parse_logging_address(), pyrosetta.distributed.cluster.utilities.SchedulerManager::_setup_clients_dict(), pyrosetta.distributed.cluster.validators::_validate_clients_indices(), utility::options::OptionCollection::add_built_in_options(), pyrosetta.distributed.viewer.modules.setHydrogens::apply(), PerformanceBenchmark::executeAllBenchmarks(), PerformanceBenchmark::executeOneBenchmark(), pyrosetta.tests.distributed.cluster.test_smoke.RuntimeTestLoggingFilter::filter(), pyrosetta.distributed.cluster.converter_tasks::get_scores_dict(), pyrosetta.distributed.cluster.converter_tasks::get_yml(), PerformanceBenchmark::getOneReport(), PerformanceBenchmark::getReport(), utility::options::OptionCollection::load(), main(), job_manager.JobWindow::refresh(), pyrosetta.distributed.cluster.serialization.Serialization::requires_compression(), pyrosetta::Set(), pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch::test_pair_search(), and pyrosetta::Vector1().

function

function[matrix]

Initial value:

= calc_pair_matrix(pair)
na = sum(pair)

matrix

matrix = paa ./ papa

Referenced by numeric::EulerAngles< T >::from_rotation_matrix(), main(), numeric::MathTensor< T >::replace_layer(), and numeric::MathNTensor< T, N >::replace_layer().

p_a

p_a = na / all

paa

paa = pair / all

papa

papa = p_a' * p_a