r_cst_tool.cc File Reference

check quality of fragments against input structure More...

#include <protocols/abinitio/Templates.hh>
#include <protocols/abinitio/PairingStatistics.hh>
#include <protocols/abinitio/StrandConstraints.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/constraints_additional/AdditionalConstraintCreators.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <core/scoring/constraints/ConstraintFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/constraints/BoundConstraint.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <protocols/jd2/NoOutputJobOutputter.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/util.hh>
#include <core/chemical/ResidueType.hh>
#include <basic/options/option_macros.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/scoring/func/FuncFactory.hh>
#include <numeric/random/random.hh>
#include <core/scoring/constraints/Constraint.hh>

Classes
class	ConstraintToolMover

Typedefs
using	ConstraintToolMoverOP = utility::pointer::shared_ptr< ConstraintToolMover >
using	ConstraintToolMoverCOP = utility::pointer::shared_ptr< const ConstraintToolMover >

Functions
	OPT_KEY (Integer, level) void register_options()
void	run ()
int	main (int argc, char *argv[])
	=============================== MAIN ============================================================ More...

Variables
static basic::Tracer	tr ("main")

Detailed Description

check quality of fragments against input structure

Author

Oliver Lange

Typedef Documentation

ConstraintToolMoverCOP

using ConstraintToolMoverCOP = utility::pointer::shared_ptr<const ConstraintToolMover>

ConstraintToolMoverOP

using ConstraintToolMoverOP = utility::pointer::shared_ptr<ConstraintToolMover>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

=============================== MAIN ============================================================

References argv, test.T009_Exceptions::e, basic::init(), register_options(), and run().

OPT_KEY()

OPT_KEY	(	Integer	,
		level
	)

References basic::options::OptionKeys::cloud::clean, constraints::combine(), basic::options::OptionKeys::templates::cst::cst, constraints::cst_file(), basic::options::OptionKeys::out::level, NEW_OPT, OPT, out::prefix(), register_options(), in::file::s(), skip(), basic::options::OptionKeys::constraints::skip_redundant, basic::options::OptionKeys::constraints::skip_redundant_width, revert_app::threshold, and top.

run()

void run

(

)

References utility::io::oc::cout, basic::options::OptionKeys::templates::cst::cst, basic::options::OptionKeys::in::path::database, basic::Tracer::Info, basic::options::OptionKeys::constraints::named, basic::options::OptionKeys::constraints::no_linearize_bounded, basic::options::option, option, tr, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

tr

basic::Tracer tr("main") ( "main"  )

static

Referenced by ConstraintToolMover::apply(), and run().