execute Namespace Reference

Functions
def	smart_int (string)
def	setup_hook ()

Variables
dictionary	name_abbreviations
string	default_name = 'sandbox'
string	default_structure = 'structures/contrived/valine.6.pdb'
dictionary	default_residues
	parser = argparse.ArgumentParser()
	default
	action
	dest
	type
	int
	nargs
	smart_int
	job = scripting.Job()
	arguments = parser.parse_args()
	residues
	pdb_string
string	command = 'git', 'rev-parse', '--show-toplevel'
	output = check_output(command, stderr=devnull)
	rosetta_path = output.strip()
	rosetta_subpath = lambda subpath: os.path.join(rosetta_path, subpath)
	background
	overwrite
	foreground
	hook
	dry_run

Function Documentation

setup_hook()

def execute.setup_hook

(

)

References rosetta_subpath.

smart_int()

def execute.smart_int

(

string

)

 Convert the given string to an integer.  Metric suffixes, if they are 
present, will be properly translated. 

References ObjexxFCL.get(), int, and smart_int.

Variable Documentation

action

execute.action

arguments

execute.arguments = parser.parse_args()

background

execute.background

Referenced by detail.make_background_color(), and detail.vformat_to().

command

execute.command = 'git', 'rev-parse', '--show-toplevel'

Referenced by ui::network::Bowman.execute(), ui::network::BowmanThread.execute(), basic.execute(), ui::network::B.run(), NativeEnsemble.write_job_to_db(), and NativeEnsemble.write_schema_to_db().

default

execute.default

default_name

string execute.default_name = 'sandbox'

default_residues

dictionary execute.default_residues

Initial value:

=  {
        'structures/contrived/valine.6.pdb': (3, 3),
        'structures/contrived/lysine.6.pdb': (3, 3),
        'structures/benchmark/1srp.pdb': (308, 319)
}

default_structure

string execute.default_structure = 'structures/contrived/valine.6.pdb'

dest

execute.dest

dry_run

execute.dry_run

Referenced by design_test(), and register_options().

foreground

execute.foreground

Referenced by detail.make_foreground_color(), and detail.vformat_to().

hook

execute.hook

Referenced by basic::TracerImpl.ios_hook().

int

execute.int

Referenced by smart_int().

job

execute.job = scripting.Job()

name_abbreviations

dictionary execute.name_abbreviations

Initial value:

=  {
        'sandbox':       'jobs/sandbox',
}

nargs

execute.nargs

output

execute.output = check_output(command, stderr=devnull)

overwrite

execute.overwrite

Referenced by utility::file.gunzip(), utility::file.gzip(), main(), register_options(), and scheme_score().

parser

execute.parser = argparse.ArgumentParser()

pdb_string

execute.pdb_string

residues

execute.residues

Referenced by CartRefineWrapperMover.apply(), ExemplarMover.apply(), calculate_helical_tail_variance(), describe_move(), do_sc_min(), do_sc_relax(), main(), mutate_and_score_RNP(), run_diiron_glu(), run_m8(), run_tyr_his(), run_zn2his(), SamplingManager.SamplingManager(), CartPerturber.set_residues(), and superimpose_via_alignment().

rosetta_path

execute.rosetta_path = output.strip()

rosetta_subpath

execute.rosetta_subpath = lambda subpath: os.path.join(rosetta_path, subpath)

Referenced by setup_hook().

smart_int

execute.smart_int

Referenced by smart_int().

type

execute.type