usec Namespace Reference

Variables
IntegerOptionKey const	frag_size ("usec:frag_size")
StringOptionKey const	residue_name ("usec:residue_name")
BooleanOptionKey const	repack_fragments ("usec:repack_fragments")
BooleanOptionKey const	native_sequence ("usec:native_sequence")
StringOptionKey const	sequence_match_sequence ("usec:sequence_match_sequence")
IntegerOptionKey const	sequence_match_position ("usec:sequence_match_position")

Variable Documentation

frag_size

IntegerOptionKey const usec::frag_size("usec:frag_size")

(

"usec:frag_size"

)

Referenced by MyScoreMover::apply(), GunnTest::computeGunnTuples(), dna_dr_loop_test(), loop_modeling_test(), loop_rebuilding_test(), main(), RunPepSpec(), setup_frags_from_vall(), setup_loops_fragment_libraries_with_ss(), simple_frag_test(), and simple_loop_modeling_test().

native_sequence

BooleanOptionKey const usec::native_sequence("usec:native_sequence")

(

"usec:native_sequence"

)

Referenced by main(), and measure_sequence_recovery().

repack_fragments

BooleanOptionKey const usec::repack_fragments("usec:repack_fragments")

(

"usec:repack_fragments"

)

Referenced by main().

residue_name

StringOptionKey const usec::residue_name("usec:residue_name")

(

"usec:residue_name"

)

Referenced by main().

sequence_match_position

IntegerOptionKey const usec::sequence_match_position("usec:sequence_match_position")

(

"usec:sequence_match_position"

)

Referenced by main().

sequence_match_sequence

StringOptionKey const usec::sequence_match_sequence("usec:sequence_match_sequence")

(

"usec:sequence_match_sequence"

)

Referenced by main().