surface_app Namespace Reference

Variables
BooleanOptionKey const	surfacescore ("surface_app::surfacescore")
BooleanOptionKey const	surfacedesign ("surface_app::surfacedesign")
BooleanOptionKey const	surfacescan ("surface_app::surfacescan")
BooleanOptionKey const	no_repack_before_scoring ("surface_app::no_repack_before_scoring")
BooleanOptionKey const	no_repack_before_design ("surface_app::no_repack_before_design")
BooleanOptionKey const	output_by_res_surface_score ("surface_app::output_by_res_surface_score")
BooleanOptionKey const	repack_mutant_position_only ("surface_app::repack_mutant_position_only")
BooleanOptionKey const	use_reweighted_score12_with_surfaceE_scorefunction ("surface_app::use_reweighted_score12_with_surfaceE_scorefunction")
BooleanOptionKey const	use_reweighted_score12_score_function ("surface_app::use_reweighted_score12_score_function")
StringOptionKey const	native ("surface_app::native")

Variable Documentation

native

StringOptionKey const surface_app::native("surface_app::native")

(

"surface_app::native"

)

Referenced by RMSByResStatistics::apply(), LoopHash_Analyze::apply(), HolesTrainingDataMover::apply(), RosettaHolesMover::apply(), MPFindInterfaceTestMover::apply(), MPDomainAssembly::apply(), calc_c3_rmsd(), CalcCdrRms::CalcCdrRms(), check_jump(), compare_frags_pose(), MatchSet::cross(), MatchSet::cross_homodimer(), decompose(), dock(), myspace::Evaluator::Evaluator(), get_resmap(), MatchSet::init(), TestQuickRelaxMover::init_from_cmd(), MPDomainAssembly::init_from_cmd(), main(), TestQuickRelaxMover::register_options(), MPDomainAssembly::register_options(), run(), run_tyr_his(), myspace::Scheduler::Scheduler(), setup_favor_native(), CalcIrms::setup_native(), simple_rotamer_recovery(), and test().

no_repack_before_design

BooleanOptionKey const surface_app::no_repack_before_design("surface_app::no_repack_before_design")

(

"surface_app::no_repack_before_design"

)

Referenced by main().

no_repack_before_scoring

BooleanOptionKey const surface_app::no_repack_before_scoring("surface_app::no_repack_before_scoring")

(

"surface_app::no_repack_before_scoring"

)

Referenced by main().

output_by_res_surface_score

BooleanOptionKey const surface_app::output_by_res_surface_score("surface_app::output_by_res_surface_score")

(

"surface_app::output_by_res_surface_score"

)

Referenced by main().

repack_mutant_position_only

BooleanOptionKey const surface_app::repack_mutant_position_only("surface_app::repack_mutant_position_only")

(

"surface_app::repack_mutant_position_only"

)

Referenced by main().

surfacedesign

BooleanOptionKey const surface_app::surfacedesign("surface_app::surfacedesign")

(

"surface_app::surfacedesign"

)

Referenced by main().

surfacescan

BooleanOptionKey const surface_app::surfacescan("surface_app::surfacescan")

(

"surface_app::surfacescan"

)

Referenced by main().

surfacescore

BooleanOptionKey const surface_app::surfacescore("surface_app::surfacescore")

(

"surface_app::surfacescore"

)

Referenced by main().

use_reweighted_score12_score_function

BooleanOptionKey const surface_app::use_reweighted_score12_score_function("surface_app::use_reweighted_score12_score_function")

(

"surface_app::use_reweighted_score12_score_function"

)

Referenced by main().

use_reweighted_score12_with_surfaceE_scorefunction

BooleanOptionKey const surface_app::use_reweighted_score12_with_surfaceE_scorefunction("surface_app::use_reweighted_score12_with_surfaceE_scorefunction")

(

"surface_app::use_reweighted_score12_with_surfaceE_scorefunction"

)

Referenced by main().