holes.cc File Reference

#include <core/id/AtomID_Map.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <basic/options/keys/holes.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/packing/HolesParams.hh>
#include <core/scoring/packstat/compute_sasa.hh>
#include <core/scoring/rms_util.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableString.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/types.hh>
#include <fstream>
#include <ObjexxFCL/format.hh>
#include <protocols/jobdist/not_universal_main.hh>
#include <protocols/moves/Mover.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <basic/database/open.hh>

Classes
class	RosettaHolesMover

Functions
std::string	tag_from_pose (core::pose::Pose &pose)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("RosettaHoles")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::options::OptionKeys::holes::holes, and basic::init().

tag_from_pose()

std::string tag_from_pose

(

core::pose::Pose &

pose

)

References beta_nonlocal::pose, str(), and tag.

Referenced by analyze_base_pair_test(), SuperDeviationMover::apply(), SpartaSuperDeviationMover::apply(), RosettaHolesMover::apply(), RNA_ScoreMover::apply(), build_full_model_test(), byres_analysis(), calculate_distances(), check_structures(), count_contacts(), drrafter_error_estimation(), BuildFullModel::fill_and_sample_full_model(), get_poseToRelax(), get_rmsd(), main(), minimizer_test(), peptide_plane_test(), SuperDeviationMover::print_stats(), SpartaSuperDeviationMover::print_stats(), rebuild_centroid_test(), rna_fullatom_minimize_test(), rna_motif_test(), rna_suitename(), scan_hbond_jumps(), score_rnp(), and swa_rna_sample().

Variable Documentation

TR

basic::Tracer TR("RosettaHoles") ( "RosettaHoles"  )

static

Referenced by RosettaHolesMover::apply(), and RosettaHolesMover::RosettaHolesMover().