benchmark_ns Namespace Reference

Functions
Size	num_domain (0)

Variables
ObjexxFCL::FArray1D< Size >	vanilla_helix
ObjexxFCL::FArray1D< Size >	domain_map
utility::vector1< utility::vector1< Size > >	domain_residue_list
Size	nres
FArray2D< bool >	hbonded
utility::vector1< std::string >	colors

Function Documentation

num_domain()

Size benchmark_ns::num_domain

(

0

)

Referenced by figure_out_domain_map(), figure_out_domain_neighbors(), figure_out_stems(), and setup_domain_list().

Variable Documentation

colors

utility::vector1< std::string > benchmark_ns::colors

Referenced by initialize_pymol_colors(), and output_benchmark_stuff().

domain_map

ObjexxFCL::FArray1D< Size > benchmark_ns::domain_map

Referenced by absorb_surrounded_canonicals(), figure_out_domain_map(), figure_out_domain_neighbors(), figure_out_stems(), and setup_domain_list().

domain_residue_list

utility::vector1< utility::vector1< Size > > benchmark_ns::domain_residue_list

Referenced by figure_out_stems(), and setup_domain_list().

hbonded

FArray2D<bool> benchmark_ns::hbonded

Referenced by bunsats(), figure_out_stems(), fill_hbond_neighbors(), rna_features_from_pose(), sasa_bunsats(), and vsasa_bunsats().

nres

Size benchmark_ns::nres

Referenced by absorb_surrounded_canonicals(), add_coordinate_constraints(), build_next_nucleotide_test(), create_rna_benchmark_test(), figure_out_domain_map(), figure_out_domain_neighbors(), figure_out_stems(), fill_hbond_neighbors(), output_benchmark_stuff(), output_struct_type(), output_sugar_geometry_parameters(), pymol_struct_type_test(), rna_torsion_check_test(), rotamerize_structure(), and setup_domain_list().

vanilla_helix

ObjexxFCL::FArray1D< Size > benchmark_ns::vanilla_helix

Referenced by absorb_surrounded_canonicals(), create_rna_benchmark_test(), figure_out_domain_map(), figure_out_domain_neighbors(), figure_out_stems(), and output_benchmark_stuff().