ZincMinimize.cc File Reference

#include <devel/metal_interface/FindClosestAtom.hh>
#include <devel/metal_interface/ZincSiteFinder.hh>
#include <devel/metal_interface/MetalSiteResidue.hh>
#include <devel/metal_interface/AddZincSiteConstraints.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <protocols/moves/Mover.hh>
#include <core/id/AtomID.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.io.hh>
#include <utility/file/FileName.hh>
#include <devel/init.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <core/kinematics/MoveMap.hh>
#include <iostream>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/Energies.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>

Classes
class	ZincMinimize

Namespaces
	local

Typedefs
typedef numeric::xyzVector< Real >	point
typedef point	axis
typedef utility::pointer::owning_ptr< ZincMinimize >	ZincMinimizeOP

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.bder.ZincMinimize")
basic::options::BooleanOptionKey const	local::zn_minimize ("zn_minimize")
basic::options::BooleanOptionKey const	local::bb_min ("bb_min")
basic::options::BooleanOptionKey const	local::zn_min_pack ("zn_min_pack")
basic::options::IntegerOptionKey const	local::zn_min_pack_cycles ("zn_min_pack_cycles")
basic::options::RealOptionKey const	local::zn_constraint_weight ("zn_constraint_weight")

Typedef Documentation

axis

typedef point axis

point

typedef numeric::xyzVector<Real> point

ZincMinimizeOP

typedef utility::pointer::owning_ptr< ZincMinimize > ZincMinimizeOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, local::bb_min, basic::init(), basic::options::option, option, TR, local::zn_constraint_weight, local::zn_min_pack, local::zn_min_pack_cycles, and local::zn_minimize.

Variable Documentation

TR

basic::Tracer TR("apps.pilot.bder.ZincMinimize") ( "apps.pilot.bder.ZincMinimize"  )

static

Referenced by ZincMinimize::add_zinc_constraints(), main(), and ZincMinimize::zn_min_pack().