Dock Struct Reference

Public Member Functions
	Dock (Size h1_pos_start_t, Size h1_pos_end_t, Size h2_pos_start_t, Size h2_pos_end_t, Size h1_nat_start_t, Size h1_nat_end_t, Size h2_nat_start_t, Size h2_nat_end_t)
	Dock (Size h1_pos_start_t, Size h1_pos_end_t, Size h1_nat_start_t, Size h1_nat_end_t)

Public Attributes
Size	h1_pos_start
Size	h1_pos_end
Size	h2_pos_start
Size	h2_pos_end
Size	h1_nat_start
Size	h1_nat_end
Size	h2_nat_start
Size	h2_nat_end
Size	nat_final_poseCoords_start
Size	nat_final_poseCoords_end
Size	repeat_final_poseCoords_start
Size	repeat_final_poseCoords_end
Size	redesign_final_poseCoords_start
Size	redesign_final_poseCoords_end
Size	nat_final_natCoords_start
Size	nat_final_natCoords_end
core::pose::Pose	unclosed_pose_full
core::pose::Pose	unclosed_pose
core::pose::Pose	closed_pose
core::pose::Pose	final_pose
Real	rmsd
bool	single_helix
Real	centroid_score
Real	vdw_score
Real	chainA_motif_score
Real	overall_motif_score

Constructor & Destructor Documentation

Dock() [1/2]

Dock::Dock ( Size  h1_pos_start_t, Size  h1_pos_end_t, Size  h2_pos_start_t, Size  h2_pos_end_t, Size  h1_nat_start_t, Size  h1_nat_end_t, Size  h2_nat_start_t, Size  h2_nat_end_t  )

inline

Dock() [2/2]

Dock::Dock ( Size  h1_pos_start_t, Size  h1_pos_end_t, Size  h1_nat_start_t, Size  h1_nat_end_t  )

inline

Member Data Documentation

centroid_score

Real Dock::centroid_score

Referenced by generate_combined_model(), and main().

chainA_motif_score

Real Dock::chainA_motif_score

Referenced by main().

closed_pose

core::pose::Pose Dock::closed_pose

final_pose

core::pose::Pose Dock::final_pose

Referenced by main().

h1_nat_end

Size Dock::h1_nat_end

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h1_nat_start

Size Dock::h1_nat_start

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h1_pos_end

Size Dock::h1_pos_end

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h1_pos_start

Size Dock::h1_pos_start

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h2_nat_end

Size Dock::h2_nat_end

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h2_nat_start

Size Dock::h2_nat_start

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h2_pos_end

Size Dock::h2_pos_end

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

h2_pos_start

Size Dock::h2_pos_start

Referenced by calculate_helical_tail_variance(), and generate_combined_model().

nat_final_natCoords_end

Size Dock::nat_final_natCoords_end

Referenced by generate_combined_model().

nat_final_natCoords_start

Size Dock::nat_final_natCoords_start

Referenced by generate_combined_model().

nat_final_poseCoords_end

Size Dock::nat_final_poseCoords_end

Referenced by generate_combined_model(), and main().

nat_final_poseCoords_start

Size Dock::nat_final_poseCoords_start

Referenced by generate_combined_model(), and main().

overall_motif_score

Real Dock::overall_motif_score

Referenced by main().

redesign_final_poseCoords_end

Size Dock::redesign_final_poseCoords_end

Referenced by generate_combined_model(), and main().

redesign_final_poseCoords_start

Size Dock::redesign_final_poseCoords_start

Referenced by generate_combined_model(), and main().

repeat_final_poseCoords_end

Size Dock::repeat_final_poseCoords_end

Referenced by generate_combined_model(), and main().

repeat_final_poseCoords_start

Size Dock::repeat_final_poseCoords_start

Referenced by generate_combined_model(), and main().

rmsd

Real Dock::rmsd

single_helix

bool Dock::single_helix

Referenced by generate_combined_model(), and main().

unclosed_pose

core::pose::Pose Dock::unclosed_pose

Referenced by generate_combined_model().

unclosed_pose_full

core::pose::Pose Dock::unclosed_pose_full

Referenced by generate_combined_model().

vdw_score

Real Dock::vdw_score

Referenced by generate_combined_model(), and main().

---

The documentation for this struct was generated from the following file:

• src/apps/pilot/brunette/repeat_dock.cc