Directory dependency graph for awatkins:
Files | |
| file | a3b_hbs_creator.cc |
| file | a3b_hbs_dock_design.cc |
| file | a3b_test.cc |
| file | aggregate_coarse_rna_vdw.cc |
| file | aramid_folding.cc |
| file | b3a_distro_kinemage.cc |
| file | best_beta_backbones.py |
| Scan through beta configurations, ruling out bump check violations. | |
| file | beta_314_vs_a3b.cc |
| file | beta_nonlocal.py |
| Look for 'secondary structures' like sheets in beta AAs. | |
| file | beta_sc_scan.py |
| file | build_a3b.cc |
| Miscellany with beta aas. | |
| file | cov_hbs.cc |
| Sidechain conjugation to acryl amides. | |
| file | cov_peptidomimetic_creator.cc |
| file | cov_test.cc |
| file | create_a3b_hbs.py |
| Scan the sidechain angles of a beta-AA. | |
| file | diversify_conotoxin.cc |
| file | evaluate_beta_mutants.py |
| aaa | |
| file | get_dihedral_b3aa.cc |
| file | hal_rna_denovo.cc |
| A first pass at running RNA fragment assembly in a HAL-aware fashion. Can only do single PDB input for now. | |
| file | hbs_creator.py |
| Creates an HBS from a peptide. | |
| file | hbs_dock_design.py |
| file | indel.cc |
| file | lactamize.py |
| Make any available lactam bridges in a PDB. | |
| file | macrocycle_sampling.cc |
| file | make_a3b_bundle.cc |
| file | make_ideal_a3b_fragment.cc |
| file | mike_linker_test.cc |
| file | oop_conformations.py |
| file | oop_scan.py |
| Creates an OOP dimer and toys around with its dihedrals. | |
| file | orn_macrocycle.py |
| Create a macrocycle using ornithine residues. | |
| file | peptidomimetic_ensembles.cc |
| file | peptoid_hbs.cc |
| file | pna.py |
| Look for structure in peptide nucleic acids. | |
| file | polyaramid_test.cc |
| file | pose_iteration.cc |
| file | sec_struct_finder.cc |
| file | test_d_l_readin.cc |
| file | test_metapatch.cc |
| file | test_mm_lj.py |
| ?? | |
| file | test_nu_angles.py |
| mmm | |
| file | test_terpenes.py |
| Test terpene RTs. | |
| file | torsion_scoring.py |
| no clue | |
| file | trial_rna_mutants.cc |
| Take a vector of name3s and positions. Do all combinations. | |
| file | triazolamer_creator.cc |
| file | triazolamer_dock_design.cc |
| file | trivial_alascan.py |
| An alascan that does no sampling. | |
| file | vancomycin.cc |
| file | vancomycin.py |
| n/a | |
