basic::options::OptionKeys::flexPepDocking Namespace Reference

Variables
BooleanOptionKey const	flexPepDocking
StringOptionKey const	params_file
IntegerOptionKey const	peptide_anchor
StringOptionKey const	receptor_chain
StringOptionKey const	peptide_chain
BooleanOptionKey const	pep_fold_only
BooleanOptionKey const	lowres_abinitio
BooleanOptionKey const	lowres_preoptimize
BooleanOptionKey const	flexPepDockingMinimizeOnly
BooleanOptionKey const	extend_peptide
BooleanOptionKey const	place_peptide_on_binding_site
IntegerOptionKey const	sample_pcs
BooleanOptionKey const	SlideIntoContact
BooleanOptionKey const	recalculate_foldtree
BooleanOptionKey const	pep_refine
BooleanOptionKey const	rbMCM
BooleanOptionKey const	torsionsMCM
BooleanOptionKey const	peptide_loop_model
BooleanOptionKey const	backrub_peptide
BooleanOptionKey const	boost_fa_atr
BooleanOptionKey const	ramp_fa_rep
BooleanOptionKey const	ramp_rama
BooleanOptionKey const	flexpep_score_only
FileOptionKey const	ref_startstruct
BooleanOptionKey const	use_cen_score
BooleanOptionKey const	design_peptide
IntegerOptionKey const	rep_ramp_cycles
IntegerOptionKey const	mcm_cycles
RealOptionKey const	random_phi_psi_preturbation
RealOptionKey const	smove_angle_range
BooleanOptionKey const	min_receptor_bb
RealOptionKey const	random_trans_start
RealOptionKey const	random_rot_start
BooleanOptionKey const	flexpep_prepack
BooleanOptionKey const	flexpep_noprepack1
BooleanOptionKey const	flexpep_noprepack2
RealOptionKey const	score_filter
IntegerOptionKey const	hb_filter
IntegerOptionKey const	hotspot_filter
StringOptionKey const	frag5
RealOptionKey const	frag9_weight
RealOptionKey const	frag5_weight
RealOptionKey const	frag3_weight
BooleanOptionKey const	pSer2Asp_centroid
BooleanOptionKey const	pSer2Glu_centroid
BooleanOptionKey const	dumpPDB_abinitio
BooleanOptionKey const	dumpPDB_lowres
BooleanOptionKey const	dumpPDB_hires

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::backrub_peptide

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::boost_fa_atr

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::design_peptide

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_abinitio

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_hires

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::dumpPDB_lowres

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::extend_peptide

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack1

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_noprepack2

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_prepack

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexpep_score_only

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDocking

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::flexPepDockingMinimizeOnly

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag3_weight

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::frag5

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag5_weight

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::frag9_weight

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hb_filter

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::hotspot_filter

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_abinitio

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::lowres_preoptimize

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::mcm_cycles

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::min_receptor_bb

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::params_file

Referenced by add_rosetta_options_8(), cs_rosetta_rna_pdb(), main(), rna_fullatom_minimize_test(), and rna_score_test().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_fold_only

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pep_refine

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_anchor

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_chain

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::peptide_loop_model

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::place_peptide_on_binding_site

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Asp_centroid

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::pSer2Glu_centroid

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_fa_rep

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::ramp_rama

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_phi_psi_preturbation

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_rot_start

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::random_trans_start

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::rbMCM

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::recalculate_foldtree

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::flexPepDocking::receptor_chain

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::flexPepDocking::ref_startstruct

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::rep_ramp_cycles

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::flexPepDocking::sample_pcs

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::score_filter

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::SlideIntoContact

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::flexPepDocking::smove_angle_range

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::torsionsMCM

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::flexPepDocking::use_cen_score

Referenced by add_rosetta_options_8().