Here is a list of all class members with links to the classes they belong to:

- k -

• k() : core::scoring::electron_density::OneGaussianScattering , core::scoring::fiber_diffraction::OneGaussianScattering
• K() : core::scoring::methods::BBDepCartBondedParameters , core::scoring::methods::BBIndepCartBondedParameters , core::scoring::methods::CartBondedParameters
• k : protocols::cluster::Exemplar , protocols::md::Constraint , protocols::normalmode::ContactStruct
• K0_ : core::scoring::methods::BBIndepCartBondedParameters
• k1 : core::scoring::fiber_diffraction::Hankel
• k2 : core::scoring::fiber_diffraction::Hankel
• k48r_48_lys_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_48k_mtsl_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_ctr_of_mass_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_docking_map_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_end_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_swap_ : protocols::ub_e2c::ubi_e2c_modeler
• k48r_trim_end_ : protocols::ub_e2c::ubi_e2c_modeler
• K_ : core::scoring::constraints::KofNConstraint
• k_ : core::scoring::func::AmberPeriodicFunc , core::scoring::func::CharmmPeriodicFunc , core::scoring::func::PeriodicFunc , protocols::normalmode::NormalMode
• K_ : protocols::relax::LocalRelax
• k_angle_ : core::scoring::methods::IdealParametersDatabase
• k_dampen_ : protocols::normalmode::NormalModeMultifunc
• k_length_ : core::scoring::methods::IdealParametersDatabase
• k_long_ : protocols::normalmode::NormalMode
• k_short_ : protocols::normalmode::NormalMode
• k_SS_ : protocols::normalmode::NormalMode
• k_torsion_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_improper_ : core::scoring::methods::IdealParametersDatabase
• k_torsion_proton_ : core::scoring::methods::IdealParametersDatabase
• k_uniform_ : protocols::normalmode::NormalMode
• Kabsch() : protocols::hybridization::TMalign
• Kappa() : core::scoring::FACTSPotential
• Kappa_ : core::scoring::FACTSPotential , protocols::md::MDBase
• KarplusFunc() : core::scoring::func::KarplusFunc
• KB_description_ : core::scoring::func::SplineFunc
• kB_T_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainSingleFunc , core::scoring::func::GaussianChainTripleFunc
• kbp_data_ : protocols::qsar::scoring_grid::ShapeGrid
• KBPGridOP : protocols::qsar::scoring_grid::ShapeGrid
• KbT_ : protocols::make_rot_lib::MakeRotLibMover , protocols::make_rot_lib::MakeRotLibOptionsData
• KCluster() : protocols::toolbox::KCluster
• KClusterData() : protocols::toolbox::KClusterData
• KClusterElement() : protocols::toolbox::KClusterElement
• keep_1st_child_pos() : core::kinematics::tree::Atom , core::kinematics::tree::BondedAtom , core::kinematics::tree::JumpAtom
• keep_aas() : core::pack::task::operation::RestrictAbsentCanonicalAAS , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
• keep_aas_ : core::pack::task::NOTAA , core::pack::task::operation::RestrictAbsentCanonicalAAS , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
• keep_adding_to_statistics_ : protocols::jd2::archive::NormalizedEvaluatedArchive
• keep_all_protocol() : protocols::frag_picker::FragmentPicker
• keep_base_fixed_ : protocols::stepwise::modeler::rna::sugar::VirtualSugarJustInTimeInstantiator , protocols::stepwise::modeler::rna::sugar::VirtualSugarSampler
• keep_canonical_aas_ : core::pack::task::PIKAA
• keep_center : protocols::toolbox::ClusterOptions
• keep_chain_and_cutpoint_open_matched() : core::pose::full_model_info::FullModelParameters
• keep_covalent_ : protocols::enzdes::AddOrRemoveMatchCsts
• keep_current() : protocols::antibody::design::MutateFrameworkForCluster
• keep_current_ : protocols::antibody::design::MutateFrameworkForCluster
• keep_current_ds_ : protocols::denovo_design::DisulfidizeMover
• keep_disulfide_cys_ : protocols::simple_moves::MakePolyXMover
• keep_dof_fixed() : core::kinematics::tree::Atom , core::kinematics::tree::Atom_ , core::kinematics::tree::BondedAtom , core::kinematics::tree::JumpAtom
• keep_fragments() : protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
• keep_gly_ : protocols::simple_moves::MakePolyXMover
• keep_history() : protocols::moves::PyMolMover
• keep_history_ : protocols::moves::PyMolMover , protocols::ncbb::NcbbDockDesignProtocol , protocols::ncbb::oop::OopDockDesignProtocol
• keep_input_foldtree_ : protocols::forge::remodel::RemodelLoopMover
• keep_input_protonation_state() : core::io::StructFileRepOptions
• keep_input_protonation_state_ : core::io::StructFileRepOptions
• keep_known_bb_torsions_at_junctions() : protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild
• keep_known_bb_torsions_at_junctions_ : protocols::forge::build::SegmentInsert , protocols::forge::build::SegmentRebuild
• keep_motif() : protocols::motifs::BuildPosition
• keep_motifhit() : protocols::motifs::BuildPosition
• keep_mover_state_ : protocols::rosetta_scripts::MultipleOutputWrapper
• keep_nas_ : core::pack::task::PIKNA
• keep_native() : protocols::protein_interface_design::filters::FilterScanFilter , protocols::toolbox::task_operations::SeqprofConsensusOperation
• keep_native_ : protocols::protein_interface_design::filters::FilterScanFilter , protocols::toolbox::task_operations::SeqprofConsensusOperation
• keep_pose_constraint_ : protocols::hybridization::HybridizeProtocol
• keep_pose_in_memory_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• keep_pose_in_memory_hydrid_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• keep_pro_ : protocols::simple_moves::MakePolyXMover
• keep_rnas_ : core::pack::task::PIKRNA
• keep_rnl_pose_ : protocols::enzdes::EnzdesScorefileFilter
• keep_rotamer() : protocols::motifs::BuildPosition
• keep_sidechains_ : protocols::cryst::RecomputeDensityMapMover
• keep_stats_type() : protocols::moves::TrialMover
• keep_stub_in_residue() : core::kinematics::Edge
• keep_task_allowed_aa_ : protocols::toolbox::task_operations::ResidueProbDesignOperation
• keep_task_allowed_aas() : protocols::toolbox::task_operations::ResidueProbDesignOperation
• keep_task_allowed_aas_ : protocols::antibody::task_operations::AddCDRProfileSetsOperation , protocols::antibody::task_operations::AddCDRProfilesOperation
• keep_top_pose() : protocols::forge::remodel::RemodelAccumulator
• keep_trying() : protocols::matdes::MatDesGreedyOptMutationMover
• keep_trying_ : protocols::matdes::MatDesGreedyOptMutationMover
• KeepRegionMover() : protocols::grafting::simple_movers::KeepRegionMover
• kept_match() : protocols::match::output::BestMatchesCollection
• kept_match_dspos1() : protocols::match::output::BestMatchesCollection
• Key : core::scoring::motif::MotifHash , core::scoring::motif::MotifHashManager , core::scoring::motif::ResPairMotifMetaBinner , core::scoring::motif::XformScore , core::scoring::motif::XfragSet , core::scoring::packing::HolesParams
• key() : protocols::frag_picker::FragmentCandidate , protocols::frag_picker::VallChunk , protocols::frag_picker::VallResidue , protocols::loophash::LeapIndex , protocols::toolbox::pose_metric_calculators::MetricValueGetter
• key_ : protocols::frag_picker::VallResidue , protocols::multistate_design::MetricCalculatorFitnessFunction , protocols::toolbox::pose_metric_calculators::MetricValueGetter
• key_mask_BB_BB_ : core::scoring::motif::MotifHashManager
• key_set_ : core::scoring::motif::MotifHash
• keyname() : core::chemical::rotamers::BasicRotamerLibrarySpecification , core::chemical::rotamers::BasicRotamerLibrarySpecificationCreator , core::chemical::rotamers::CenrotRotamerLibrarySpecification , core::chemical::rotamers::CenrotRotamerLibrarySpecificationCreator , core::chemical::rotamers::DunbrackRotamerLibrarySpecification , core::chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator , core::chemical::rotamers::NCAARotamerLibrarySpecification , core::chemical::rotamers::NCAARotamerLibrarySpecificationCreator , core::chemical::rotamers::PDBRotamerLibrarySpecification , core::chemical::rotamers::PDBRotamerLibrarySpecificationCreator , core::chemical::rotamers::PeptoidRotamerLibrarySpecification , core::chemical::rotamers::PeptoidRotamerLibrarySpecificationCreator , core::chemical::rotamers::RotamerLibrarySpecification , core::chemical::rotamers::RotamerLibrarySpecificationCreator , core::chemical::rotamers::StoredRotamerLibrarySpecification , core::chemical::rotamers::StoredRotamerLibrarySpecificationCreator , core::import_pose::PDBSilentStructCreator , core::io::silent::BinarySilentStructCreator , core::io::silent::ProteinSilentStruct_SinglePrecCreator , core::io::silent::ProteinSilentStructCreator , core::io::silent::RigidBodySilentStructCreator , core::io::silent::RNA_SilentStructCreator , core::io::silent::ScoreFileSilentStructCreator , core::io::silent::ScoreJumpFileSilentStructCreator , core::io::silent::SilentStructCreator , core::pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator , core::pack::dunbrack::DunbrackConstraintCreator , core::pack::dunbrack::SingleResidueDunbrackLibraryCreator , core::pack::rotamers::SingleBasicRotamerLibraryCreator , core::pack::rotamers::SingleLigandRotamerLibraryCreator , core::pack::rotamers::SingleNCAARotamerLibraryCreator , core::pack::rotamers::SingleResiduePeptoidLibraryCreator , core::pack::rotamers::SingleResidueRotamerLibraryCreator , core::pack::rotamers::StoredRotamerLibraryCreator , core::pack::task::operation::AddBehaviorRLTCreator , core::pack::task::operation::AllResFilterCreator , core::pack::task::operation::AnyResFilterCreator , core::pack::task::operation::AppendResidueRotamerSetCreator , core::pack::task::operation::AppendRotamerCreator , core::pack::task::operation::AppendRotamerSetCreator , core::pack::task::operation::ChainIsCreator , core::pack::task::operation::ChainIsntCreator , core::pack::task::operation::DisallowIfNonnativeCreator , core::pack::task::operation::DisallowIfNonnativeRLTCreator , core::pack::task::operation::ExtraChiCutoffCreator , core::pack::task::operation::ExtraChiCutoffRLTCreator , core::pack::task::operation::ExtraRotamersCreator , core::pack::task::operation::ExtraRotamersGenericCreator , core::pack::task::operation::ExtraRotamersGenericRLTCreator , core::pack::task::operation::IncludeCurrentCreator , core::pack::task::operation::IncludeCurrentRLTCreator , core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator , core::pack::task::operation::InitializeFromCommandlineCreator , core::pack::task::operation::NoRepackDisulfidesCreator , core::pack::task::operation::NoResFilterCreator , core::pack::task::operation::OperateOnCertainResiduesCreator , core::pack::task::operation::OperateOnResidueSubsetCreator , core::pack::task::operation::OptCysHGCreator , core::pack::task::operation::OptHCreator , core::pack::task::operation::PreserveCBetaCreator , core::pack::task::operation::PreserveCBetaRLTCreator , core::pack::task::operation::PreventRepackingCreator , core::pack::task::operation::PreventRepackingRLTCreator , core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator , core::pack::task::operation::ReadResfileCreator , core::pack::task::operation::ReplicateTaskCreator , core::pack::task::operation::ResFilterCreator , core::pack::task::operation::ResidueHasPropertyCreator , core::pack::task::operation::ResidueIndexIsCreator , core::pack::task::operation::ResidueIndexIsntCreator , core::pack::task::operation::ResidueLacksPropertyCreator , core::pack::task::operation::ResidueName3IsCreator , core::pack::task::operation::ResidueName3IsntCreator , core::pack::task::operation::ResiduePDBIndexIsCreator , core::pack::task::operation::ResiduePDBIndexIsntCreator , core::pack::task::operation::ResiduePDBInfoHasLabelCreator , core::pack::task::operation::ResiduePDBInfoLacksLabelCreator , core::pack::task::operation::ResidueTypeFilterCreator , core::pack::task::operation::ResLvlTaskOperationCreator , core::pack::task::operation::RestrictAbsentCanonicalAASCreator , core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator , core::pack::task::operation::RestrictResidueToRepackingCreator , core::pack::task::operation::RestrictToRepackingCreator , core::pack::task::operation::RestrictToRepackingRLTCreator , core::pack::task::operation::RestrictYSDesignCreator , core::pack::task::operation::RotamerExplosionCreator , core::pack::task::operation::SetRotamerCouplingsCreator , core::pack::task::operation::SetRotamerLinksCreator , core::pack::task::operation::TaskOperationCreator , core::pack::task::residue_selector::ClashBasedRepackShellSelectorCreator , core::scoring::constraints::AmbiguousConstraintCreator , core::scoring::constraints::AmbiguousNMRConstraintCreator , core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator , core::scoring::constraints::AngleConstraintCreator , core::scoring::constraints::AtomPairConstraintCreator , core::scoring::constraints::BigBinConstraintCreator , core::scoring::constraints::ConstraintCreator , core::scoring::constraints::CoordinateConstraintCreator , core::scoring::constraints::DihedralConstraintCreator , core::scoring::constraints::DihedralPairConstraintCreator , core::scoring::constraints::FabConstraintCreator , core::scoring::constraints::KofNConstraintCreator , core::scoring::constraints::LocalCoordinateConstraintCreator , core::scoring::constraints::MultiConstraintCreator , core::scoring::constraints::NamedAngleConstraintCreator , core::scoring::constraints::SequenceProfileConstraintCreator , core::scoring::constraints::SiteConstraintCreator , core::scoring::constraints::SiteConstraintResiduesCreator , core::select::residue_selector::AndResidueSelectorCreator , core::select::residue_selector::ChainSelectorCreator , core::select::residue_selector::InterGroupInterfaceByVectorSelectorCreator , core::select::residue_selector::JumpDownstreamSelectorCreator , core::select::residue_selector::JumpUpstreamSelectorCreator , core::select::residue_selector::LayerSelectorCreator , core::select::residue_selector::NeighborhoodResidueSelectorCreator , core::select::residue_selector::NotResidueSelectorCreator , core::select::residue_selector::NumNeighborsSelectorCreator , core::select::residue_selector::OrResidueSelectorCreator , core::select::residue_selector::PhiSelectorCreator , core::select::residue_selector::PrimarySequenceNeighborhoodSelectorCreator , core::select::residue_selector::ResidueIndexSelectorCreator , core::select::residue_selector::ResidueNameSelectorCreator , core::select::residue_selector::ResiduePDBInfoHasLabelSelectorCreator , core::select::residue_selector::ResidueSelectorCreator , core::select::residue_selector::SecondaryStructureSelectorCreator , core::select::residue_selector::TrueResidueSelectorCreator , core::sequence::ChemicalShiftSequenceCreator , core::sequence::CompositeSequenceCreator , core::sequence::SequenceCouplingCreator , core::sequence::SequenceCreator , core::sequence::SequenceProfileCreator , core::sequence::SimpleSequenceCreator , protocols::aa_composition::AddCompositionConstraintMoverCreator , protocols::aa_composition::ClearCompositionConstraintsMoverCreator , protocols::abinitio::abscript::AbscriptLoopCloserCMCreator , protocols::abinitio::abscript::AbscriptMoverCreator , protocols::abinitio::abscript::ConstraintPreparerCreator , protocols::abinitio::abscript::FragmentCMCreator , protocols::abinitio::abscript::FragmentJumpCMCreator , protocols::abinitio::abscript::JumpSampleDataCreator , protocols::abinitio::abscript::RigidChunkCMCreator , protocols::abinitio::abscript::StructPerturberCMCreator , protocols::abinitio::DomainAssemblyCreator , protocols::analysis::InterfaceAnalyzerMoverCreator , protocols::analysis::PeptideDeriverFilterCreator , protocols::antibody::AntibodyCDRGrafterCreator , protocols::antibody::constraints::CDRDihedralConstraintMoverCreator , protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMoverCreator , protocols::antibody::constraints::ParatopeSiteConstraintMoverCreator , protocols::antibody::design::AntibodyDesignMoverCreator , protocols::antibody::design::AntibodyDesignProtocolCreator , protocols::antibody::design::MutateFrameworkForClusterCreator , protocols::antibody::task_operations::AddCDRProfileSetsOperationCreator , protocols::antibody::task_operations::AddCDRProfilesOperationCreator , protocols::antibody::task_operations::DisableAntibodyRegionOperationCreator , protocols::antibody::task_operations::DisableCDRsOperationCreator , protocols::antibody::task_operations::RestrictToCDRsAndNeighborsCreator , protocols::backrub::BackrubMoverCreator , protocols::backrub::BackrubProtocolCreator , protocols::backrub::BackrubSidechainMoverCreator , protocols::canonical_sampling::DbTrajectoryRecorderCreator , protocols::canonical_sampling::HamiltonianExchangeCreator , protocols::canonical_sampling::MetricRecorderCreator , protocols::canonical_sampling::MetropolisHastingsMoverCreator , protocols::canonical_sampling::ParallelTemperingCreator , protocols::canonical_sampling::PDBTrajectoryRecorderCreator , protocols::canonical_sampling::ProgressBarObserverCreator , protocols::canonical_sampling::SidechainMetropolisHastingsMoverCreator , protocols::canonical_sampling::SilentTrajectoryRecorderCreator , protocols::canonical_sampling::SimulatedTemperingCreator , protocols::canonical_sampling::TrialCounterObserverCreator , protocols::carbohydrates::GlycanRelaxMoverCreator , protocols::carbohydrates::LinkageConformerMoverCreator , protocols::carbohydrates::SimpleGlycosylateMoverCreator , protocols::comparative_modeling::GenericJobInputterCreator , protocols::comparative_modeling::LoopRelaxMoverCreator , protocols::comparative_modeling::ThreadingJobInputterCreator , protocols::constraints_additional::BindingSiteConstraintCreator , protocols::constraints_additional::NamedAtomPairConstraintCreator , protocols::constraints_additional::SequenceCoupling1BDConstraintCreator , protocols::constraints_additional::SequenceCouplingConstraintCreator , protocols::contact_map::ContactMapCreator , protocols::cryst::DockLatticeMoverCreator , protocols::cryst::FitBfactorsMoverCreator , protocols::cryst::LoadDensityMapMoverCreator , protocols::cryst::MakeLatticeMoverCreator , protocols::cryst::MakeLayerMoverCreator , protocols::cryst::RecomputeDensityMapMoverCreator , protocols::cryst::ReportGradientsMoverCreator , protocols::cryst::SetCrystWeightMoverCreator , protocols::cryst::SetRefinementOptionsMoverCreator , protocols::cryst::TagPoseWithRefinementStatsMoverCreator , protocols::cryst::UpdateCrystInfoCreator , protocols::cryst::UpdateSolventMoverCreator , protocols::cyclic_peptide::CreateAngleConstraintCreator , protocols::cyclic_peptide::CreateDistanceConstraintCreator , protocols::cyclic_peptide::CreateTorsionConstraintCreator , protocols::cyclic_peptide::DeclareBondCreator , protocols::cyclic_peptide::PeptideStubMoverCreator , protocols::cyclic_peptide::TryDisulfPermutationsCreator , protocols::denovo_design::connection::BridgeChainsCreator , protocols::denovo_design::connection::BridgeTomponentsCreator , protocols::denovo_design::connection::ConnectTerminiWithDisulfideCreator , protocols::denovo_design::connection::ExtendChainCreator , protocols::denovo_design::connection::StapleChainsCreator , protocols::denovo_design::constraints::CoordinateConstraintGeneratorCreator , protocols::denovo_design::constraints::FileConstraintGeneratorCreator , protocols::denovo_design::DisulfidizeMoverCreator , protocols::denovo_design::filters::ExposedHydrophobicsFilterCreator , protocols::denovo_design::filters::PreProlineFilterCreator , protocols::denovo_design::filters::SSPredictionFilterCreator , protocols::denovo_design::task_operations::ConsensusLoopDesignOperationCreator , protocols::design_opt::GreedyOptMutationMoverCreator , protocols::dna::DesignProteinBackboneAroundDNACreator , protocols::dna::DnaInterfaceMinMoverCreator , protocols::dna::DnaInterfaceMultiStateDesignCreator , protocols::dna::DnaInterfacePackerCreator , protocols::dna::RestrictDesignToProteinDNAInterfaceCreator , protocols::dna::SeparateDnaFromNonDnaCreator , protocols::dna::WatsonCrickRotamerCouplingsCreator , protocols::docking::ConformerSwitchMoverCreator , protocols::docking::DockingInitialPerturbationCreator , protocols::docking::DockingProtocolCreator , protocols::docking::DockSetupMoverCreator , protocols::docking::membrane::MPDockingMoverCreator , protocols::docking::membrane::MPDockingSetupMoverCreator , protocols::docking::membrane::MPFindInterfaceMoverCreator , protocols::docking::membrane::QuickRelaxPartnersSeparatelyCreator , protocols::docking::TemperedDockingCreator , protocols::electron_density::BfactorFittingMoverCreator , protocols::electron_density::ReportFSCCreator , protocols::electron_density::ScaleMapIntensitiesCreator , protocols::electron_density::SetupForDensityScoringMoverCreator , protocols::electron_density::VoxelSpacingRefinementMoverCreator , protocols::environment::AutoCutDataCreator , protocols::environment::CoMTrackerCMCreator , protocols::environment::EnvMoverCreator , protocols::environment::ScriptCMCreator , protocols::enzdes::AddLigandMotifRotamersOperationCreator , protocols::enzdes::AddOrRemoveMatchCstsCreator , protocols::enzdes::AddRigidBodyLigandConfsCreator , protocols::enzdes::BackboneSamplerCreator , protocols::enzdes::DetectProteinLigandInterfaceOperationCreator , protocols::enzdes::DiffAtomSasaFilterCreator , protocols::enzdes::EnzdesJobInputterCreator , protocols::enzdes::EnzdesJobOutputterCreator , protocols::enzdes::EnzdesScorefileFilterCreator , protocols::enzdes::EnzRepackMinimizeCreator , protocols::enzdes::EnzScoreFilterCreator , protocols::enzdes::LigBurialFilterCreator , protocols::enzdes::LigDSasaFilterCreator , protocols::enzdes::LigInterfaceEnergyFilterCreator , protocols::enzdes::PackRotamersMoverPartGreedyCreator , protocols::enzdes::PredesignPerturbMoverCreator , protocols::enzdes::ProteinLigandInterfaceUpweighterOperationCreator , protocols::enzdes::RemoveLigandFilterCreator , protocols::enzdes::RepackWithoutLigandFilterCreator , protocols::enzdes::ResidueConformerFilterCreator , protocols::enzdes::SetCatalyticResPackBehaviorCreator , protocols::enzdes::UpdateEnzdesHeaderMoverCreator , protocols::features::DatabaseJobInputterCreator , protocols::features::DatabaseJobOutputterCreator , protocols::features::ReportToDBCreator , protocols::features::TrajectoryReportToDBCreator , protocols::filters::CalculatorFilterCreator , protocols::filters::CombinedFilterCreator , protocols::filters::CompoundFilterCreator , protocols::filters::ContingentFilterCreator , protocols::filters::FalseFilterCreator , protocols::filters::FilterCreator , protocols::filters::IfThenFilterCreator , protocols::filters::MoveBeforeFilterCreator , protocols::filters::ReplicateFilterCreator , protocols::filters::StochasticFilterCreator , protocols::filters::TimeFilterCreator , protocols::filters::TrueFilterCreator , protocols::fldsgn::BluePrintBDRCreator , protocols::fldsgn::CircularPermutationCreator , protocols::fldsgn::filters::CoreDunbrackFilterCreator , protocols::fldsgn::filters::FragQualFilterCreator , protocols::fldsgn::filters::HelixKinkFilterCreator , protocols::fldsgn::filters::HelixPairingFilterCreator , protocols::fldsgn::filters::HSSTripletFilterCreator , protocols::fldsgn::filters::InterlockingAromaFilterCreator , protocols::fldsgn::filters::NcontactsFilterCreator , protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilterCreator , protocols::fldsgn::filters::SecondaryStructureCountFilterCreator , protocols::fldsgn::filters::SecondaryStructureFilterCreator , protocols::fldsgn::filters::SecondaryStructureHasResidueFilterCreator , protocols::fldsgn::filters::SheetTopologyFilterCreator , protocols::fldsgn::MatchResiduesMoverCreator , protocols::fldsgn::potentials::SetAACompositionPotentialCreator , protocols::fldsgn::potentials::SetSecStructEnergiesCreator , protocols::fldsgn::SheetConstraintGeneratorCreator , protocols::flexpep_docking::FlexPepDockingProtocolCreator , protocols::flxbb::FlxbbDesignCreator , protocols::flxbb::InterlockAromaCreator , protocols::flxbb::LayerDesignOperationCreator , protocols::forge::constraints::InverseRotamersCstGeneratorCreator , protocols::forge::constraints::InvrotTreeCstGeneratorCreator , protocols::forge::constraints::NtoCConstraintGeneratorCreator , protocols::forge::constraints::RemoveConstraintsCreator , protocols::forge::remodel::RemodelMoverCreator , protocols::forge::remodel::RemodelRotamerLinksCreator , protocols::forge::remodel::ResidueVicinityCstGeneratorCreator , protocols::frag_picker::frag_movers::FragSetFromH5MoverCreator , protocols::frag_picker::frag_movers::MergeFragSetMoverCreator , protocols::frag_picker::frag_movers::ReduceFragLengthMoverCreator , protocols::generalized_kinematic_closure::GeneralizedKICCreator , protocols::grafting::AnchoredGraftMoverCreator , protocols::grafting::CCDEndsGraftMoverCreator , protocols::grafting::simple_movers::DeleteRegionMoverCreator , protocols::grafting::simple_movers::InsertPoseIntoPoseMoverCreator , protocols::grafting::simple_movers::KeepRegionMoverCreator , protocols::grafting::simple_movers::ReplaceRegionMoverCreator , protocols::helical_bundle::BackboneGridSamplerCreator , protocols::helical_bundle::BundleGridSamplerCreator , protocols::helical_bundle::BundleReporterFilterCreator , protocols::helical_bundle::FitSimpleHelixCreator , protocols::helical_bundle::MakeBundleCreator , protocols::helical_bundle::MakeBundleHelixCreator , protocols::helical_bundle::PerturbBundleCreator , protocols::helical_bundle::PerturbBundleHelixCreator , protocols::hotspot_hashing::movers::PlaceSurfaceProbeCreator , protocols::hybridization::BackboneTorsionPerturbationCreator , protocols::hybridization::BackboneTorsionSamplerCreator , protocols::hybridization::CartesianSamplerCreator , protocols::hybridization::HybridizeProtocolCreator , protocols::idealize::IdealizeMoverCreator , protocols::indexed_structure_store::filters::FragmentLookupFilterCreator , protocols::jd2::AtomTreeDiffJobInputterCreator , protocols::jd2::AtomTreeDiffJobOutputterCreator , protocols::jd2::EnsembleJobInputterCreator , protocols::jd2::JD2ResourceManagerJobInputterCreator , protocols::jd2::JobInputterCreator , protocols::jd2::JobOutputterCreator , protocols::jd2::LargeNstructJobInputterCreator , protocols::jd2::LazySilentFileJobInputterCreator , protocols::jd2::NoOutputJobOutputterCreator , protocols::jd2::parser::DataLoaderCreator , protocols::jd2::parser::FragSetLoaderCreator , protocols::jd2::parser::MonteCarloLoaderCreator , protocols::jd2::parser::ResidueSelectorLoaderCreator , protocols::jd2::parser::ScoreFunctionLoaderCreator , protocols::jd2::parser::TaskOperationLoaderCreator , protocols::jd2::PDBJobInputterCreator , protocols::jd2::PDBJobOutputterCreator , protocols::jd2::PoseInputStreamJobInputterCreator , protocols::jd2::ScoreOnlyJobOutputterCreator , protocols::jd2::ScreeningJobInputterCreator , protocols::jd2::SilentFileJobInputterCreator , protocols::jd2::SilentFileJobOutputterCreator , protocols::kinematic_closure::KicMoverCreator , protocols::ligand_docking::AddHydrogensCreator , protocols::ligand_docking::AtomCountFilterCreator , protocols::ligand_docking::ChainExistsFilterCreator , protocols::ligand_docking::CompleteConnectionsFilterCreator , protocols::ligand_docking::CompoundTranslateCreator , protocols::ligand_docking::ComputeLigandRDFCreator , protocols::ligand_docking::FinalMinimizerCreator , protocols::ligand_docking::GrowLigandCreator , protocols::ligand_docking::HBondAcceptorFilterCreator , protocols::ligand_docking::HBondDonorFilterCreator , protocols::ligand_docking::HeavyAtomFilterCreator , protocols::ligand_docking::HighResDockerCreator , protocols::ligand_docking::InterfaceBuilderLoaderCreator , protocols::ligand_docking::InterfaceScoreCalculatorCreator , protocols::ligand_docking::LigandAreaLoaderCreator , protocols::ligand_docking::LigandDesignCreator , protocols::ligand_docking::MinimizeBackboneCreator , protocols::ligand_docking::MolarMassFilterCreator , protocols::ligand_docking::MolecularMassFilterCreator , protocols::ligand_docking::MoveMapBuilderLoaderCreator , protocols::ligand_docking::RandomConformersCreator , protocols::ligand_docking::RotateCreator , protocols::ligand_docking::RotatesCreator , protocols::ligand_docking::SlideTogetherCreator , protocols::ligand_docking::StartFromCreator , protocols::ligand_docking::TransformCreator , protocols::ligand_docking::TranslateCreator , protocols::ligand_docking::WriteLigandMolFileCreator , protocols::loop_build::LoopmodelWrapperCreator , protocols::loop_build::LoopMover_SlidingWindowCreator , protocols::loop_modeling::LoopBuilderCreator , protocols::loop_modeling::LoopModelerCreator , protocols::loop_modeling::LoopProtocolCreator , protocols::loop_modeling::refiners::MinimizationRefinerCreator , protocols::loop_modeling::refiners::RepackingRefinerCreator , protocols::loop_modeling::refiners::RotamerTrialsRefinerCreator , protocols::loop_modeling::samplers::LegacyKicSamplerCreator , protocols::loop_modeling::utilities::PrepareForCentroidCreator , protocols::loop_modeling::utilities::PrepareForFullatomCreator , protocols::loophash::LoopHashDiversifierCreator , protocols::loophash::LoopHashMoverWrapperCreator , protocols::loops::FoldTreeFromLoopsCreator , protocols::loops::loop_closure::ccd::CCDLoopClosureMoverCreator , protocols::loops::loop_mover::LoopCMCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCDCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_KICCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_MovesCreator , protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCDCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_BackrubCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_CCDCreator , protocols::loops::loop_mover::refine::LoopMover_Refine_KICCreator , protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainerCreator , protocols::loops::loop_mover::refine::RepackTrialCreator , protocols::loops::loop_mover::refine::ShearMinCCDTrialCreator , protocols::loops::loop_mover::refine::SmallMinCCDTrialCreator , protocols::loops::loops_definers::LoopsDefinerLoaderCreator , protocols::make_rot_lib::MakeRotLibJobInputterCreator , protocols::match::MatcherMoverCreator , protocols::matdes::BuildingBlockInterfaceOperationCreator , protocols::matdes::ClashCheckFilterCreator , protocols::matdes::ExtractSubposeMoverCreator , protocols::matdes::GetRBDOFValuesCreator , protocols::matdes::InterfacePackingFilterCreator , protocols::matdes::MatDesGreedyOptMutationMoverCreator , protocols::matdes::OligomericAverageDegreeFilterCreator , protocols::matdes::SchemePlaceMotifsMoverCreator , protocols::matdes::SymDofMoverCreator , protocols::matdes::SymUnsatHbondFilterCreator , protocols::md::CartesianMDCreator , protocols::membrane::AddMembraneMoverCreator , protocols::membrane::AddMPLigandMoverCreator , protocols::membrane::benchmark::MakeCanonicalHelixCreator , protocols::membrane::benchmark::SampleTiltAnglesCreator , protocols::membrane::FlipMoverCreator , protocols::membrane::MembranePositionFromTopologyMoverCreator , protocols::membrane::MPMutateRelaxMoverCreator , protocols::membrane::MPQuickRelaxMoverCreator , protocols::membrane::OptimizeMembranePositionMoverCreator , protocols::membrane::OptimizeProteinEmbeddingMoverCreator , protocols::membrane::RotationMoverCreator , protocols::membrane::SetMembraneCenterMoverCreator , protocols::membrane::SetMembraneNormalMoverCreator , protocols::membrane::SetMembranePositionMoverCreator , protocols::membrane::SpinAroundPartnerMoverCreator , protocols::membrane::symmetry::SymmetricAddMembraneMoverCreator , protocols::membrane::TiltMoverCreator , protocols::membrane::TransformIntoMembraneMoverCreator , protocols::membrane::TranslationMoverCreator , protocols::membrane::TranslationRotationMoverCreator , protocols::membrane::visualize::VisualizeEmbeddingMoverCreator , protocols::membrane::visualize::VisualizeMembraneMoverCreator , protocols::motif_grafting::movers::MotifGraftCreator , protocols::motifs::MotifDnaPackerCreator , protocols::moves::DsspMoverCreator , protocols::moves::IfMoverCreator , protocols::moves::IteratedConvergenceMoverCreator , protocols::moves::MoverCreator , protocols::moves::PyMolMoverCreator , protocols::moves::RampingMoverCreator , protocols::moves::RandomMoverCreator , protocols::ncbb::NcbbDockDesignProtocolCreator , protocols::ncbb::oop::OopCreatorMoverCreator , protocols::ncbb::oop::OopDockDesignProtocolCreator , protocols::ncbb::SecStructFinderCreator , protocols::ncbb::SecStructMinimizeMoverCreator , protocols::nonlocal::SingleFragmentMoverCreator , protocols::normalmode::NormalModeMinimizerCreator , protocols::pb_potential::SetupPoissonBoltzmannPotentialCreator , protocols::pockets::PocketConstraintCreator , protocols::pose_length_moves::FixAllLoopsMoverCreator , protocols::pose_length_moves::InsertResMoverCreator , protocols::pose_length_moves::NearNativeLoopCloserCreator , protocols::pose_reporters::EnergyReporterCreator , protocols::pose_reporters::FilterReporterCreator , protocols::pose_reporters::RMSDReporterCreator , protocols::pose_selectors::AndSelectorCreator , protocols::pose_selectors::ClusterPoseSelectorCreator , protocols::pose_selectors::FilterCreator , protocols::pose_selectors::OrSelectorCreator , protocols::pose_selectors::TopNByPropertyCreator , protocols::protein_interface_design::filters::AtomicContactCountFilterCreator , protocols::protein_interface_design::filters::AverageDegreeFilterCreator , protocols::protein_interface_design::filters::BindingStrainFilterCreator , protocols::protein_interface_design::filters::BoltzmannFilterCreator , protocols::protein_interface_design::filters::ClashWithTargetFilterCreator , protocols::protein_interface_design::filters::DesignableResiduesFilterCreator , protocols::protein_interface_design::filters::DisulfideFilterCreator , protocols::protein_interface_design::filters::FilterScanFilterCreator , protocols::protein_interface_design::filters::FNatFilterCreator , protocols::protein_interface_design::filters::HbondsToAtomFilterCreator , protocols::protein_interface_design::filters::HbondsToResidueFilterCreator , protocols::protein_interface_design::filters::InterfaceHolesFilterCreator , protocols::protein_interface_design::filters::IRmsdFilterCreator , protocols::protein_interface_design::filters::LRmsdFilterCreator , protocols::protein_interface_design::filters::RelativeSegmentFilterCreator , protocols::protein_interface_design::filters::RmsdFilterCreator , protocols::protein_interface_design::filters::RmsdSimpleFilterCreator , protocols::protein_interface_design::filters::SequenceRecoveryFilterCreator , protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilterCreator , protocols::protein_interface_design::filters::SSamountFilterCreator , protocols::protein_interface_design::filters::StubScoreFilterCreator , protocols::protein_interface_design::filters::StubScoreLoopsFilterCreator , protocols::protein_interface_design::filters::TorsionCreator , protocols::protein_interface_design::movers::AddChainBreakCreator , protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator , protocols::protein_interface_design::movers::BackrubDDMoverCreator , protocols::protein_interface_design::movers::BestHotspotCstMoverCreator , protocols::protein_interface_design::movers::BuildAlaPoseCreator , protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator , protocols::protein_interface_design::movers::DisulfideMoverCreator , protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator , protocols::protein_interface_design::movers::DockWithHotspotMoverCreator , protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator , protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator , protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator , protocols::protein_interface_design::movers::HotspotHasherMoverCreator , protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator , protocols::protein_interface_design::movers::LoopFinderCreator , protocols::protein_interface_design::movers::LoopLengthChangeCreator , protocols::protein_interface_design::movers::LoopMoverFromCommandLineCreator , protocols::protein_interface_design::movers::LoopOverCreator , protocols::protein_interface_design::movers::LoopRemodelCreator , protocols::protein_interface_design::movers::MapHotspotCreator , protocols::protein_interface_design::movers::PatchdockTransformCreator , protocols::protein_interface_design::movers::PeptideStapleDesignMoverCreator , protocols::protein_interface_design::movers::PlacementAuctionMoverCreator , protocols::protein_interface_design::movers::PlacementMinimizationMoverCreator , protocols::protein_interface_design::movers::PlaceOnLoopCreator , protocols::protein_interface_design::movers::PlaceSimultaneouslyMoverCreator , protocols::protein_interface_design::movers::PlaceStubMoverCreator , protocols::protein_interface_design::movers::PrepackMoverCreator , protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMoverCreator , protocols::protein_interface_design::movers::RandomMutationCreator , protocols::protein_interface_design::movers::RepackMinimizeCreator , protocols::protein_interface_design::movers::SaveAndRetrieveSidechainsCreator , protocols::protein_interface_design::movers::SetAtomTreeCreator , protocols::protein_interface_design::movers::SetTemperatureFactorCreator , protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMoverCreator , protocols::protein_interface_design::movers::SetupHotspotConstraintsMoverCreator , protocols::protein_interface_design::movers::ShoveResidueMoverCreator , protocols::protein_interface_design::movers::SpinMoverCreator , protocols::protein_interface_design::movers::SubroutineMoverCreator , protocols::protein_interface_design::movers::TaskAwareCstsCreator , protocols::protein_interface_design::movers::TopologyBrokerMoverCreator , protocols::protein_interface_design::movers::TryRotamersCreator , protocols::protein_interface_design::movers::VLBCreator , protocols::protein_interface_design::ParserJobInputterCreator , protocols::qsar::qsarCreator , protocols::qsar::RenderGridsToKinemageCreator , protocols::qsar::scoring_grid::AtrGridCreator , protocols::qsar::scoring_grid::ChargeGridCreator , protocols::qsar::scoring_grid::ClassicGridCreator , protocols::qsar::scoring_grid::GridCreator , protocols::qsar::scoring_grid::GridInitMoverCreator , protocols::qsar::scoring_grid::HbaGridCreator , protocols::qsar::scoring_grid::HbdGridCreator , protocols::qsar::scoring_grid::LigandPropertyScoreCreator , protocols::qsar::scoring_grid::RepGridCreator , protocols::qsar::scoring_grid::ScoringGridLoaderCreator , protocols::qsar::scoring_grid::ShapeGridCreator , protocols::qsar::scoring_grid::SolvationGridCreator , protocols::qsar::scoring_grid::SolvationMetaGridCreator , protocols::qsar::scoring_grid::VdwGridCreator , protocols::rbsegment_relax::IdealizeHelicesMoverCreator , protocols::rbsegment_relax::MakeStarTopologyMoverCreator , protocols::rbsegment_relax::OptimizeThreadingMoverCreator , protocols::relax::AtomCoordinateCstMoverCreator , protocols::relax::ClassicRelaxCreator , protocols::relax::FastRelaxCreator , protocols::relax::LocalRelaxCreator , protocols::relax::membrane::MPFastRelaxMoverCreator , protocols::residue_selectors::TaskSelectorCreator , protocols::rigid::RigidBodyPerturbNoCenterMoverCreator , protocols::rigid::RigidBodyTiltMoverCreator , protocols::rigid::RigidBodyTransMoverCreator , protocols::rigid::RollMoverCreator , protocols::rigid::UniformRigidBodyCMCreator , protocols::rigid::UniformRigidBodyMoverCreator , protocols::rosetta_scripts::AdditionalOutputWrapperCreator , protocols::rosetta_scripts::MultipleOutputWrapperCreator , protocols::rosetta_scripts::MultiplePoseMoverCreator , protocols::rosetta_scripts::ParsedProtocolCreator , protocols::rosetta_scripts::PosePropertyReporterCreator , protocols::rosetta_scripts::PoseSelectorCreator , protocols::rosetta_scripts::SavePoseMoverCreator , protocols::rotamer_recovery::RotamerRecoveryMoverCreator , protocols::seeded_abinitio::CAcstGeneratorCreator , protocols::seeded_abinitio::CloseFoldCreator , protocols::seeded_abinitio::CoordinateCstCreator , protocols::seeded_abinitio::DefineMovableLoopsCreator , protocols::seeded_abinitio::GrowPeptidesCreator , protocols::seeded_abinitio::SeedFoldTreeCreator , protocols::seeded_abinitio::SeedSetupMoverCreator , protocols::seeded_abinitio::SegmentHybridizerCreator , protocols::seeded_abinitio::SwapSegmentCreator , protocols::sewing::AddStartnodeFragmentsCreator , protocols::sewing::AppendAssemblyMoverCreator , protocols::sewing::AssemblyConstraintsMoverCreator , protocols::sewing::AssemblyMoverCreator , protocols::sewing::EnumerateAssemblyMoverCreator , protocols::sewing::GivenPathAssemblyMoverCreator , protocols::sewing::GreedyAssemblyMoverCreator , protocols::sewing::LoophashAssemblyMoverCreator , protocols::sewing::MonteCarloAssemblyMoverCreator , protocols::sewing::NodeConstraintAssemblyMoverCreator , protocols::sewing::ReadNativeRotamersFileCreator , protocols::sewing::ReadRepeatNativeRotamersFileCreator , protocols::sewing::RehashAssemblyMoverCreator , protocols::sewing::RepeatAssemblyMoverCreator , protocols::simple_filters::AlaScanFilterCreator , protocols::simple_filters::AngleToVectorFilterCreator , protocols::simple_filters::AtomicContactFilterCreator , protocols::simple_filters::AtomicDistanceFilterCreator , protocols::simple_filters::AveragePathLengthFilterCreator , protocols::simple_filters::BuriedUnsatHbondFilterCreator , protocols::simple_filters::ConservedPosMutationFilterCreator , protocols::simple_filters::ConstraintScoreCutoffFilterCreator , protocols::simple_filters::DdgFilterCreator , protocols::simple_filters::DdGScanCreator , protocols::simple_filters::DeltaFilterCreator , protocols::simple_filters::DisulfideEntropyFilterCreator , protocols::simple_filters::EnergyPerResidueFilterCreator , protocols::simple_filters::ExpiryFilterCreator , protocols::simple_filters::FileExistFilterCreator , protocols::simple_filters::FileRemoveFilterCreator , protocols::simple_filters::GeometryFilterCreator , protocols::simple_filters::HolesFilterCreator , protocols::simple_filters::InterfaceBindingEnergyDensityFilterCreator , protocols::simple_filters::InterfaceSasaFilterCreator , protocols::simple_filters::InterRepeatContactFilterCreator , protocols::simple_filters::IntraRepeatContactFilterCreator , protocols::simple_filters::LeastNativeLike9merFilterCreator , protocols::simple_filters::MotifScoreFilterCreator , protocols::simple_filters::MultipleSigmoidsFilterCreator , protocols::simple_filters::MutationsFilterCreator , protocols::simple_filters::NeighborTypeFilterCreator , protocols::simple_filters::NetChargeFilterCreator , protocols::simple_filters::NMerPSSMEnergyFilterCreator , protocols::simple_filters::NMerSVMEnergyFilterCreator , protocols::simple_filters::NonSequentialNeighborsFilterCreator , protocols::simple_filters::OperatorFilterCreator , protocols::simple_filters::PackStatFilterCreator , protocols::simple_filters::PoseCommentFilterCreator , protocols::simple_filters::PoseInfoFilterCreator , protocols::simple_filters::RangeFilterCreator , protocols::simple_filters::RelativePoseFilterCreator , protocols::simple_filters::RepeatParameterFilterCreator , protocols::simple_filters::ReportFilterCreator , protocols::simple_filters::ResidueBurialFilterCreator , protocols::simple_filters::ResidueCountFilterCreator , protocols::simple_filters::ResidueDistanceFilterCreator , protocols::simple_filters::ResidueIEFilterCreator , protocols::simple_filters::ResidueSetChainEnergyFilterCreator , protocols::simple_filters::ResiduesInInterfaceFilterCreator , protocols::simple_filters::RotamerBoltzmannWeightFilterCreator , protocols::simple_filters::SavePoseConstraintToFileFilterCreator , protocols::simple_filters::SaveResfileToDiskFilterCreator , protocols::simple_filters::ScoreCutoffFilterCreator , protocols::simple_filters::ScoreTypeFilterCreator , protocols::simple_filters::ShapeComplementarityFilterCreator , protocols::simple_filters::SidechainRmsdFilterCreator , protocols::simple_filters::SigmoidFilterCreator , protocols::simple_filters::SSElementMotifContactFilterCreator , protocols::simple_filters::SSMotifFinderFilterCreator , protocols::simple_filters::StemFinderFilterCreator , protocols::simple_filters::SymmetricMotifFilterCreator , protocols::simple_filters::TaskAwareSASAFilterCreator , protocols::simple_filters::TaskAwareScoreTypeFilterCreator , protocols::simple_filters::TerminusDistanceFilterCreator , protocols::simple_filters::TotalSasaFilterCreator , protocols::simple_moves::AddChainMoverCreator , protocols::simple_moves::AddConstraintsToCurrentConformationMoverCreator , protocols::simple_moves::AddJobPairDataCreator , protocols::simple_moves::AlignChainMoverCreator , protocols::simple_moves::BBDihedralSamplerMoverCreator , protocols::simple_moves::BBGaussianMoverCreator , protocols::simple_moves::bin_transitions::InitializeByBinsCreator , protocols::simple_moves::bin_transitions::PerturbByBinsCreator , protocols::simple_moves::BoltzmannRotamerMoverCreator , protocols::simple_moves::ChangeAndResetFoldTreeMoverCreator , protocols::simple_moves::ClearConstraintsMoverCreator , protocols::simple_moves::ConsensusDesignMoverCreator , protocols::simple_moves::ConstraintSetMoverCreator , protocols::simple_moves::ContingentAcceptMoverCreator , protocols::simple_moves::CoupledMoverCreator , protocols::simple_moves::CutChainMoverCreator , protocols::simple_moves::ddGCreator , protocols::simple_moves::DeleteChainMoverCreator , protocols::simple_moves::DeleteChainsMoverCreator , protocols::simple_moves::DisulfideInsertionMoverCreator , protocols::simple_moves::DumpPdbCreator , protocols::simple_moves::ExtendedPoseMoverCreator , protocols::simple_moves::FavorSequenceProfileCreator , protocols::simple_moves::FavorSymmetricSequenceCreator , protocols::simple_moves::FindConsensusSequenceCreator , protocols::simple_moves::ForceDisulfidesMoverCreator , protocols::simple_moves::GenericMonteCarloMoverCreator , protocols::simple_moves::LoadPDBMoverCreator , protocols::simple_moves::LoadUnboundRotMoverCreator , protocols::simple_moves::MakePolyXMoverCreator , protocols::simple_moves::MembraneTopologyCreator , protocols::simple_moves::MergePDBMoverCreator , protocols::simple_moves::MinMoverCreator , protocols::simple_moves::MinPackMoverCreator , protocols::simple_moves::ModifyVariantTypeMoverCreator , protocols::simple_moves::MonteCarloRecoverCreator , protocols::simple_moves::MonteCarloResetCreator , protocols::simple_moves::MonteCarloTestCreator , protocols::simple_moves::MSDMoverCreator , protocols::simple_moves::MutateResidueCreator , protocols::simple_moves::PackRotamersMoverCreator , protocols::simple_moves::PDBReloadMoverCreator , protocols::simple_moves::PeriodicBoxMoverCreator , protocols::simple_moves::PSSM2BfactorMoverCreator , protocols::simple_moves::RandomOmegaFlipMoverCreator , protocols::simple_moves::RandomTorsionMoverCreator , protocols::simple_moves::RepackSidechainsMoverCreator , protocols::simple_moves::RepeatPropagationMoverCreator , protocols::simple_moves::ReportEffectivePKACreator , protocols::simple_moves::ResetBaselineMoverCreator , protocols::simple_moves::ResidueTypeConstraintMoverCreator , protocols::simple_moves::RingConformationMoverCreator , protocols::simple_moves::RotamerTrialsMinMoverCreator , protocols::simple_moves::RotamerTrialsMoverCreator , protocols::simple_moves::SaneMinMoverCreator , protocols::simple_moves::ScoreMoverCreator , protocols::simple_moves::SequenceProfileMoverCreator , protocols::simple_moves::SetTorsionCreator , protocols::simple_moves::ShearMoverCreator , protocols::simple_moves::ShortBackrubMoverCreator , protocols::simple_moves::sidechain_moves::JumpRotamerSidechainMoverCreator , protocols::simple_moves::sidechain_moves::PerturbChiSidechainMoverCreator , protocols::simple_moves::sidechain_moves::PerturbRotamerSidechainMoverCreator , protocols::simple_moves::sidechain_moves::SetChiMoverCreator , protocols::simple_moves::sidechain_moves::SidechainMCMoverCreator , protocols::simple_moves::sidechain_moves::SidechainMoverCreator , protocols::simple_moves::SimpleThreadingMoverCreator , protocols::simple_moves::SmallMoverCreator , protocols::simple_moves::StorePoseSnapshotCreator , protocols::simple_moves::StructProfileMoverCreator , protocols::simple_moves::SuperimposeMoverCreator , protocols::simple_moves::SwitchChainOrderMoverCreator , protocols::simple_moves::SwitchResidueTypeSetMoverCreator , protocols::simple_moves::symmetry::DetectSymmetryMoverCreator , protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverCreator , protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverCreator , protocols::simple_moves::symmetry::SetupForSymmetryMoverCreator , protocols::simple_moves::symmetry::SetupNCSMoverCreator , protocols::simple_moves::symmetry::SymMinMoverCreator , protocols::simple_moves::symmetry::SymPackRotamersMoverCreator , protocols::simple_moves::symmetry::SymRotamerTrialsMoverCreator , protocols::simple_moves::symmetry::TaskAwareSymMinMoverCreator , protocols::simple_moves::TaskAwareMinMoverCreator , protocols::simple_moves::TumbleCreator , protocols::simple_moves::VirtualRootMoverCreator , protocols::symmetric_docking::membrane::MPSymDockMoverCreator , protocols::symmetric_docking::SymDockProtocolCreator , protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverCreator , protocols::symmetric_docking::SymFoldandDockRbTrialMoverCreator , protocols::symmetric_docking::SymFoldandDockSlideTrialMoverCreator , protocols::toolbox::task_operations::AlignedThreadOperationCreator , protocols::toolbox::task_operations::CrystalContactsOperationCreator , protocols::toolbox::task_operations::DatabaseThreadCreator , protocols::toolbox::task_operations::DesignAroundOperationCreator , protocols::toolbox::task_operations::DsspDesignOperationCreator , protocols::toolbox::task_operations::ImportUnboundRotamersOperationCreator , protocols::toolbox::task_operations::InteractingRotamerExplosionCreator , protocols::toolbox::task_operations::JointSequenceOperationCreator , protocols::toolbox::task_operations::LimitAromaChi2OperationCreator , protocols::toolbox::task_operations::LinkResiduesCreator , protocols::toolbox::task_operations::ModifyAnnealerCreator , protocols::toolbox::task_operations::PreventChainFromRepackingOperationCreator , protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationCreator , protocols::toolbox::task_operations::ProteinCoreFilterCreator , protocols::toolbox::task_operations::ProteinInterfaceDesignOperationCreator , protocols::toolbox::task_operations::ReadResfileFromDBCreator , protocols::toolbox::task_operations::RestrictByCalculatorsOperationCreator , protocols::toolbox::task_operations::RestrictChainToRepackingOperationCreator , protocols::toolbox::task_operations::RestrictConservedLowDdgOperationCreator , protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationCreator , protocols::toolbox::task_operations::RestrictIdentitiesOperationCreator , protocols::toolbox::task_operations::RestrictInterGroupVectorOperationCreator , protocols::toolbox::task_operations::RestrictNativeResiduesOperationCreator , protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperationCreator , protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationCreator , protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationCreator , protocols::toolbox::task_operations::RestrictToCDRH3LoopCreator , protocols::toolbox::task_operations::RestrictToInterfaceCreator , protocols::toolbox::task_operations::RestrictToInterfaceOperationCreator , protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationCreator , protocols::toolbox::task_operations::RestrictToLoopsAndNeighborsCreator , protocols::toolbox::task_operations::RestrictToLoopsCreator , protocols::toolbox::task_operations::RestrictToNeighborhoodOperationCreator , protocols::toolbox::task_operations::RestrictToTerminiOperationCreator , protocols::toolbox::task_operations::RetrieveStoredTaskOperationCreator , protocols::toolbox::task_operations::SelectByDeltaScoreOperationCreator , protocols::toolbox::task_operations::SelectByDensityFitOperationCreator , protocols::toolbox::task_operations::SelectBySASAOperationCreator , protocols::toolbox::task_operations::SelectResiduesWithinChainOperationCreator , protocols::toolbox::task_operations::SeqprofConsensusOperationCreator , protocols::toolbox::task_operations::SetIGTypeOperationCreator , protocols::toolbox::task_operations::StoreCombinedStoredTasksMoverCreator , protocols::toolbox::task_operations::StoreCompoundTaskMoverCreator , protocols::toolbox::task_operations::StoreTaskMoverCreator , protocols::toolbox::task_operations::ThreadSequenceOperationCreator
• keys() : core::scoring::motif::MotifHash
• KeySet : core::scoring::motif::MotifHash
• keyword_in_progress() : core::io::HeaderInformation
• keyword_in_progress_ : core::io::HeaderInformation
• keywords() : core::io::HeaderInformation
• Keywords : core::io::HeaderInformation
• keywords_ : core::io::HeaderInformation
• kic_ : protocols::seeded_abinitio::CloseFold
• kic_closure() : protocols::pose_length_moves::PossibleLoop
• KIC_loop_close() : protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
• KIC_loop_close_with_perturbations() : protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
• kic_modeler_ : protocols::stepwise::modeler::StepWiseConnectionSampler
• kic_modeler_if_relevant() : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions
• kic_modeler_if_relevant_ : protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions
• kic_mover_ : protocols::loop_modeling::LoopBuilder
• kic_res1_ : protocols::cyclic_peptide::DeclareBond
• kic_res2_ : protocols::cyclic_peptide::DeclareBond
• kic_template_ : protocols::denovo_design::connection::BridgeTomponents
• kicclose_ : protocols::mpi_refinement::WorkUnit_KicCloser
• kick_out_pose_at_idx() : protocols::stepwise::modeler::align::StepWiseClusterer
• KicMover() : protocols::kinematic_closure::KicMover
• kill_antiparallel() : core::scoring::SS_Killhairpins_Info
• kill_antiparallel_ : core::scoring::SS_Killhairpins_Info
• kill_parallel() : core::scoring::SS_Killhairpins_Info
• kill_parallel_ : core::scoring::SS_Killhairpins_Info
• kind : core::scoring::packstat::Event
• kinemage_file_name_ : protocols::match::output::WriteUpstreamCoordinateKinemage , protocols::match::output::WriteUpstreamHitKinemage
• kinematic_control_ : protocols::abinitio::Protocol
• kinematic_mover_ : protocols::enzdes::EnzdesFlexBBProtocol , protocols::protein_interface_design::movers::PlaceOnLoop
• KinematicAbinitio() : protocols::abinitio::KinematicAbinitio
• KinematicControl() : protocols::abinitio::KinematicControl
• KinematicMover() : protocols::loops::loop_closure::kinematic_closure::KinematicMover
• KinematicPerturber() : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber
• kinematics() : protocols::abinitio::Protocol
• KinematicTaskControl() : protocols::abinitio::KinematicTaskControl
• KinematicWrapper() : protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
• kinetic_energy_ : protocols::md::MDBase
• KinFunGroupTK() : protocols::kinmatch::KinFunGroupTK
• kink_anion_atoms() : protocols::antibody::AntibodyInfo
• kink_anion_residue() : protocols::antibody::AntibodyInfo
• kink_begin() : protocols::antibody::AntibodyInfo
• kink_cation_atoms() : protocols::antibody::AntibodyInfo
• kink_cation_residue() : protocols::antibody::AntibodyInfo
• kink_end() : protocols::antibody::AntibodyInfo
• kink_trp() : protocols::antibody::AntibodyInfo
• kinked_ : protocols::antibody_legacy::Antibody
• kinmover() : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber
• kinmover_ : protocols::loops::loop_closure::kinematic_closure::KinematicPerturber , protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
• kmax_ : core::scoring::electron_density::ElectronDensity
• KMedoid() : protocols::toolbox::KMedoid
• kmin_ : core::scoring::electron_density::ElectronDensity
• known_atoms_ : core::scoring::saxs::FormFactorManager
• KofNConstraint() : core::scoring::constraints::KofNConstraint
• KofNConstraintCreator() : core::scoring::constraints::KofNConstraintCreator
• KromerMann() : core::scoring::electron_density::KromerMann , core::scoring::fiber_diffraction::KromerMann
• KRSQuery() : protocols::kinmatch::KRSQuery
• Ks_spline_ : core::scoring::methods::BBDepCartBondedParameters
• kstep_ : core::scoring::electron_density::ElectronDensity
• kT() : core::sequence::MCAligner
• kT_ : core::sequence::MCAligner
• kt_ : protocols::carbohydrates::GlycanRelaxMover
• kT_ : protocols::mpi_refinement::StructAvrgMover , protocols::optimize_weights::PNatLigPoseOptEData , protocols::stepwise::monte_carlo::mover::AddMover , protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo , protocols::surface_docking::CentroidRelaxMover , protocols::surface_docking::FullatomRelaxMover
• Ktheta() : core::scoring::mm::MMBondAngleResidueTypeParam
• Ktheta_ : core::scoring::mm::MMBondAngleResidueTypeParam
• kurtosis() : protocols::toolbox::InteratomicVarianceMatrix