HelixParams.cc File Reference

Functions implementing the Crick equations for a straight helix (NOT a helical bundle). More...

#include <math.h>
#include <numeric/types.hh>
#include <numeric/crick_equations/HelixParams.hh>

Namespaces
	numeric
	Unit headers.
	numeric::crick_equations

Functions
Real	numeric::crick_equations::x (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the x-coordinate of a point on a helix given r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::y (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the y-coordinate of a point on a helix given r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::z (Real const &, Real const &, Real const &t, Real const &dz1, Real const &, Real const &delta_z1)
	Returns the z-coordinate of a point on a helix given r1, omega1, and t. Note that this is not translated or rotated. More...
xyzVector< Real >	numeric::crick_equations::xyz (Real const &r1, Real const &omega1, Real const &t, Real const &dz1, Real const &delta_omega1, Real const &delta_z1)
	Returns the x-, y-, and z-coordinates of a point on a helix given r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dx_dr1 (Real const &, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of x with respect to r1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dy_dr1 (Real const &, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of y with respect to r1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dz_dr1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of z with respect to r1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dx_domega1 (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of x with respect to omega1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dy_domega1 (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of y with respect to omega1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dz_domega1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of z with respect to omega1 for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dx_ddz1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of x with respect to dz1 (rise per residue) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dy_ddz1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of y with respect to dz1 (rise per residue) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dz_ddz1 (Real const &, Real const &, Real const &t, Real const &, Real const &, Real const &)
	Returns the derivative of z with respect to dz1 (rise per residue) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dx_ddelta_omega1 (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of x with respect to delta_omega1 (omega-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dy_ddelta_omega1 (Real const &r1, Real const &omega1, Real const &t, Real const &, Real const &delta_omega1, Real const &)
	Returns the derivative of y with respect to delta_omega1 (omega-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dz_ddelta_omega1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of z with respect to delta_omega1 (omega-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dx_ddelta_z1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of x with respect to delta_z1 (z-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dy_ddelta_z1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of y with respect to delta_z1 (z-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...
Real	numeric::crick_equations::dz_ddelta_z1 (Real const &, Real const &, Real const &, Real const &, Real const &, Real const &)
	Returns the derivative of z with respect to delta_z1 (z-offset) for a given value of r1, omega1, and t. Note that this is not translated or rotated. More...

Detailed Description

Functions implementing the Crick equations for a straight helix (NOT a helical bundle).

Author

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu)