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3.7
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Here is a list of all namespaces with brief descriptions:
[detail level
1
2
3
4
5
6
]
N
aa
N
aaaa
►
N
abinitio
N
star
N
abrelax
N
amino_acids
►
N
AnchoredDesign
N
akash
N
filters
N
testing
►
N
antibody
N
design
►
N
app
N
delta_score_per_mutation
►
N
pyrosetta_toolkit
►
N
modules
N
calibur
►
N
definitions
N
restype_definitions
N
DesignBreakdown
N
help
►
N
prettytable
N
prettytable
N
prettytable_test
N
setup
►
N
protocols
N
AnalysisProtocols
N
DesignProtocols
N
DockingProtocols
N
FloppyTailProtocol
N
GraftingProtocols
N
HighResLoopModelingProtocols
N
LowResLoopModelingProtocols
N
MinimizationProtocols
N
ProtocolBaseClass
N
PythonPDB
N
Region
N
RegionalScoring
N
ScoreAnalysis
N
SQLPDB
N
Structure
►
N
tools
N
analysis
N
general_tools
N
input
N
interfaces
N
loops
N
output
N
protocols
N
sequence
N
pyrosetta_toolkit
N
tests
►
N
window_main
►
N
frames
N
InputFrame
N
OutputFrame
N
QuickProtocolsFrame
N
SimpleAnalysisFrame
N
global_variables
►
N
IO
N
GUIInput
N
GUIOutput
N
SessionIO
N
menu
►
N
window_modules
►
N
clean_pdb
N
FixPDBWindow
►
N
design
N
ResfileDesignWindow
►
N
full_control
N
FullControlWindow
►
N
insert_bfactor
N
InsertBFactor
►
N
interactive_terminal
N
interactive_terminal
►
N
ligand_ncaa_ptm_manager
N
ligand_ncaa_ptm_manager
►
N
options_system
N
OptionSystemManager
►
N
protocol_builder
N
ProtocolBuilder
►
N
pymol_integration
N
PyMOL
►
N
scorefunction
N
ScoreFxnControl
►
N
vicinity_options
N
vicinity_window
►
N
surface_docking
N
append_data
N
constraints
N
movers
N
surf_param
N
surface_docking
►
N
apps
►
N
public1
►
N
scenarios
N
chemically_conjugated_docking
N
archive
N
arls
N
arls_impl
N
assembly
N
assign_charges
N
backrub
►
N
basic
Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input
►
N
database
N
insert_statement_generator
N
schema_generator
N
datacache
N
gpu
N
mpi
►
N
options
►
N
OptionKeys
►
N
abinitio
N
star
N
abrelax
►
N
AnchoredDesign
N
akash
N
filters
N
testing
N
AnchoredPDBCreator
►
N
antibody
N
design
N
archive
N
assembly
N
backrub
N
batch_relax
N
bbg
►
N
blivens
N
disulfide_scorer
N
boinc
N
broker
N
bunsat_calc2
►
N
canonical_sampling
N
out
N
probabilities
N
sampling
►
N
carbohydrates
N
clash_check
N
glycan_relax
N
casp
N
chemical
N
chemically_conjugated_docking
N
chunk
N
cluster
►
N
cm
N
hybridize
N
sanitize
►
N
cmiles
N
jumping
N
kcluster
N
constraints
N
contactMap
►
N
corrections
N
chemical
N
score
N
shapovalov_lib
N
cp
N
crossmatch
N
cryst
N
csa
N
cutoutdomain
N
cyclic_peptide
N
cyclization
N
dc
N
ddg
N
DenovoProteinDesign
►
N
dna
►
N
design
N
reversion
N
specificity
N
specificity
►
N
docking
►
N
ligand
N
grid
N
DomainAssembly
N
dwkulp
N
edensity
N
enzdes
N
evaluation
N
evolution
N
fast_loops
N
filters
N
fingerprint
►
N
flexpack
N
annealer
N
flexPepDocking
►
N
FloppyTail
N
short_tail
►
N
flxbb
N
layer
N
fold_and_dock
N
fold_cst
N
fold_from_loops
►
N
frags
N
ABEGO
N
contacts
N
nonlocal
N
picking
N
scoring
►
N
full_model
N
rna
N
gen_pharmacophore
N
gpu
N
holes
N
hotspot
►
N
in
N
dbms
N
file
N
path
N
rdf
N
indexed_structure_store
►
N
inout
N
dbms
N
intf
N
james
N
jd2
N
jumps
N
krassk
►
N
lh
N
fragpdb
N
symfragrm
N
loodo
N
loopfcst
N
LoopModel
►
N
loops
N
ccd
►
N
magnesium
N
montecarlo
N
make_rot_lib
N
match
►
N
matdes
N
design
N
dock
N
mutalyze
N
mc
N
membrane
►
N
mh
N
dump
N
filter
N
harvest
N
match
N
path
N
score
►
N
mistakes
N
chemical
N
MonteCarlo
N
motifs
►
N
mp
►
N
benchmark
N
ideal_helix
N
tilt_angle
N
dock
N
lipid_acc
N
mutate_relax
N
output
N
quickrelax
N
scoring
N
setup
N
transform
N
viewer
N
visualize
►
N
ms
N
checkpoint
N
murphp
N
nonlocal
►
N
optE
N
rescore
N
optimization
N
orbitals
►
N
out
N
file
N
path
►
N
packing
N
ex1
N
ex1aro
N
ex1aro_exposed
N
ex2
N
ex2aro
N
ex2aro_exposed
N
ex3
N
ex4
N
exdna
N
packstat
N
parser
N
patterson
N
pb_potential
N
PCS
N
PCSTS1
N
PCSTS2
N
PCSTS3
N
PCSTS4
N
pepspec
N
peptide_deriver
►
N
pH
N
calc_pka
N
phil
N
pocket_grid
►
N
pose_metrics
N
shobuns
N
ProQ
N
qsar
N
rbe
N
RBSegmentRelax
N
rdc
►
N
relax
N
centroid
N
range
►
N
remodel
N
design
N
domainFusion
N
RemodelLoopMover
N
staged_sampling
N
resample
N
rescore
N
rigid
N
rings
►
N
rna
►
N
farna
N
db
N
erraser
N
minimize
N
robert
N
rot_anl
N
rotamerdump
N
run
N
sample_around
N
sasa
►
N
score
N
fiber_diffraction
N
saxs
N
sewing
N
sicdock
N
smhybrid
N
SSrbrelax
►
N
stepwise
►
N
monte_carlo
N
csa
N
protein
N
rna
N
strand_assembly
N
symmetry
N
TailSegment
N
task_operations
►
N
templates
N
cst
N
fragsteal
N
testing
N
threadsc
►
N
ufv
N
insert
N
unfolded_state
N
willmatch
N
wum
►
N
resource_manager
N
fallback_configuration
N
locator
►
N
sampling
N
orientations
N
svd
N
batch_relax
N
bbg
N
best_ifaceE
N
binder
►
N
blivens
N
disulfide_scorer
N
boinc
N
boost
►
N
boost_adaptbx
N
python
N
broker
N
build
N
BuildBindings
N
BuildPackagedBindings
N
bunsat_calc2
N
calccontacts
►
N
canonical_sampling
N
out
N
probabilities
N
sampling
►
N
carbohydrates
N
clash_check
N
glycan_relax
N
casp
N
chemical
N
chemically_conjugated_docking
N
chunk
N
clean_pdb_keep_ligand
N
cluster
►
N
cm
N
hybridize
N
sanitize
►
N
cmiles
N
jumping
N
kcluster
N
compare_times
N
constraints
N
ContactMap
N
contactMap
N
contacts
N
coordlib
►
N
core
►
N
options
N
OptionKeys
►
N
corrections
N
chemical
N
score
N
shapovalov_lib
N
cp
N
crossmatch
N
cryst
N
csa
N
cutoutdomain
N
cyclic_peptide
N
cyclization
N
dc
N
dddm
N
ddg
►
N
demo
N
D010_Pose_structure
N
D020_Pose_scoring
N
D030_Fold_tree
N
D040_Movemap
N
D050_Packer_task
N
D060_Folding
N
D070_Refinement
N
D080_Loop_modeling
N
D090_Ala_scan
N
D100_Docking
N
D110_DNA_interface
N
D120_Ligand_interface
N
DenovoProteinDesign
N
devel
►
N
dna
►
N
design
N
reversion
N
specificity
N
specificity
►
N
docking
►
N
ligand
N
grid
N
DomainAssembly
N
dwkulp
N
edensity
N
enzdes
N
Equations
N
evaluation
N
evolution
N
exclude
N
extract_scores_and_constraints
N
fast_loops
N
filters
N
fingerprint
►
N
flexpack
N
annealer
N
flexPepDocking
►
N
FloppyTail
N
short_tail
►
N
flxbb
N
layer
►
N
fmt
N
internal
N
fold_and_dock
N
fold_cst
N
fold_from_loops
N
fragment
►
N
frags
N
ABEGO
N
contacts
N
nonlocal
N
picking
N
scoring
►
N
full_model
N
rna
N
gen_pharmacophore
N
get_scores
N
gpu
N
hbs_design
N
holes
N
hotspot
►
N
in
N
dbms
N
file
N
path
N
rdf
N
indexed_structure_store
►
N
inout
N
dbms
N
intf
►
N
io
N
silent
N
IO
N
james
N
jd2
N
jumps
N
krassk
►
N
lh
N
fragpdb
N
symfragrm
N
loadPDB
N
local
N
loodo
N
loopfcst
N
LoopModel
►
N
loops
N
ccd
N
loops_kic
►
N
magnesium
N
montecarlo
N
make_amb_constr
N
make_rot_lib
N
make_static_database
N
make_symmdef_file_denovo
N
make_templates
N
match
►
N
matdes
N
design
N
dock
N
mutalyze
N
mc
N
membrane
►
N
mh
N
dump
N
filter
N
harvest
N
match
N
path
N
score
►
N
mistakes
N
chemical
N
MonteCarlo
N
motifs
►
N
mp
►
N
benchmark
N
ideal_helix
N
tilt_angle
N
dock
N
lipid_acc
N
mutate_relax
N
output
N
quickrelax
N
scoring
N
setup
N
transform
N
viewer
N
visualize
N
mp_ddG
N
mrlo
►
N
ms
N
checkpoint
N
murphp
N
nonlocal
►
N
numeric
Unit headers
N
alignment
►
N
constants
N
d
N
f
N
ld
N
r
N
conversions
N
coordinate_fitting
N
crick_equations
N
deriv
N
expression_parser
N
fourier
►
N
geometry
N
hashing
N
histograms
►
N
interpolation
►
N
periodic_range
N
full
N
half
N
spline
N
kdtree
►
N
kinematic_closure
N
radians
N
linear_algebra
N
model_quality
N
nls
N
random
N
statistics
►
N
ObjexxFCL
N
bit
N
format
N
Fortran
►
N
internal
N
ObserverMediator
N
oop_design
►
N
optE
N
rescore
N
optimization
N
options
N
options_class
N
options_rosetta
N
orbitals
►
N
out
N
file
N
path
►
N
packing
N
ex1
N
ex1aro
N
ex1aro_exposed
N
ex2
N
ex2aro
N
ex2aro_exposed
N
ex3
N
ex4
N
exdna
N
packstat
N
parser
N
patterson
N
pb_potential
N
PCS
N
PCSTS1
N
PCSTS2
N
PCSTS3
N
PCSTS4
N
pdb_to_molfile
N
PDBInfo
N
pepspec
N
peptide_deriver
N
peptoid_design
►
N
pH
N
calc_pka
N
phil
N
PhiPsi
►
N
platform
Fixed size types
N
file
N
PlotSurfaceContactMap
N
pocket_grid
N
pose
►
N
pose_metrics
N
shobuns
N
predict_ddG
N
ProQ
►
N
protocols
N
pmut_scan
N
prune_atdiff_top5pct
N
PyMOL_demo
N
PyMOLPyRosettaServer
►
N
pyrosetta
N
logging_support
N
teaching
►
N
toolbox
N
adjust_library_path
N
cleaning
N
extract_coords_pose
N
generate_resfile
N
load_ligand
N
make_rna_rosetta_ready
N
mutants
N
rcsb
N
structural_alignment
N
qsar
N
rbe
N
RBSegmentRelax
N
rdc
►
N
relax
N
centroid
N
range
►
N
remodel
N
design
N
domainFusion
N
RemodelLoopMover
N
staged_sampling
N
resample
N
rescore
N
revert_app
N
rigid
N
rings
►
N
rna
►
N
farna
N
db
N
erraser
N
minimize
N
robert
►
N
rosetta_binders
N
has_insertion_operator_implementation
N
rosetta_scripts
N
rot_anl
N
rotamerdump
N
run
N
sample_around
N
sasa
►
N
score
N
fiber_diffraction
N
saxs
N
score_app
►
N
scoring
N
constraints
N
self-test
N
sequence_recovery
N
setup
N
setup_pyrosetta
N
sewing
N
sicdock
N
sidechain_cst_3
N
smhybrid
►
N
src
N
basic
►
N
core
N
fragment
N
io
N
pose
N
initialization
N
logging_support
N
numeric
►
N
protocols
N
antibody
N
canonical_sampling
N
environment
N
jd2
N
loops
N
rigid
N
rosetta_scripts
N
simple_filters
N
PyMolLink
N
utility
N
SSrbrelax
►
N
stepwise
►
N
monte_carlo
N
csa
N
protein
N
rna
N
strand_assembly
N
symmetry
N
TailSegment
N
task
N
task_operations
►
N
templates
N
cst
N
fragsteal
►
N
test
N
C001_Carbohydrates_Demo01
N
G000_Main_GUI
N
G100_Functions_Input
N
G101_Functions_Output
N
G102_Functions_General
N
G103_Functions_Analysis
N
G104_Functions_Sequence
N
G200_Module_Region
N
G201_Module_Structure
N
G202_Module_PythonPDB
N
G203_Module_SQLPDB
N
G204_Module_ScoreAnalysis
N
G205_Module_RegionalScoring
N
T000_Imports
N
T005_Bindings
N
T007_TracerIO
N
T010_LoadPDB
N
T100_Basic
N
T150_PyMOL_Integration
N
T200_Scoring
N
T201_Scoring_pre_talaris
N
T220_AtomAtomPairEnergies
N
T250_Constraints
N
T400_Refinement
N
T500_Packing
N
T600_Docking
N
T650_LoopsKIC
N
T660_LoopBuilding
N
T700_FoldTree
N
T800_ClassicRelax
N
T850_SubClassing
N
T860_SubClassing_EnergyMethods
N
T870_SubClassing_EnergyMethods2
N
T880_Other
N
Workshop2test
N
Workshop3test
N
Workshop4test
N
Workshop5test
N
Workshop6test
N
Workshop7test
N
Workshop8test
N
Workshop9_my_shapes
N
Workshop9test
N
TestBindings
N
testing
►
N
tests
N
test_basic
N
threadsc
►
N
toolbox
N
adjust_library_path
N
cleaning
N
extract_coords_pose
N
generate_resfile
N
load_ligand
N
make_rna_rosetta_ready
N
mutants
N
rcsb
N
structural_alignment
►
N
tools
N
CppParser
N
dox_extract
N
doxygen
N
DoxygenExtractorPyPP
►
N
ufv
N
insert
N
unfolded_state
N
usec
►
N
utility
Comment 0
N
excn
N
factory
N
file
N
graph
►
N
io
N
ic
N
mpi_stream
N
oc
►
N
json_spirit
N
internal_
►
N
keys
N
lookup
N
libsvm
►
N
options
►
N
OptionKeys
►
N
options
Option
display option keys
N
table
N
pointer
N
py
N
serialization
N
signals
N
sql_database
N
tag
N
thread
N
tools
N
vall
N
willmatch
N
wum
►
N
yaml
N
composer
N
constructor
N
cyaml
N
dumper
N
emitter
N
error
N
events
N
loader
N
nodes
N
parser
N
reader
N
representer
N
resolver
N
scanner
N
serializer
N
tokens
►
N
zlib_stream
N
detail
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