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Rosetta
3.7
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Rosetta
3.7
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Namespaces | |
| design | |
Functions | |
| BooleanOptionKey const | antibody ("antibody") |
| StringOptionKey const | numbering_scheme ("antibody:numbering_scheme") |
| StringOptionKey const | cdr_definition ("antibody:cdr_definition") |
| StringOptionKey const | light_chain ("antibody:light_chain") |
| BooleanOptionKey const | check_cdr_chainbreaks ("antibody:check_cdr_chainbreaks") |
| BooleanOptionKey const | check_cdr_pep_bond_geom ("antibody:check_cdr_pep_bond_geom") |
| BooleanOptionKey const | graft_l1 ("antibody:graft_l1") |
| StringOptionKey const | l1_template ("antibody:l1_template") |
| BooleanOptionKey const | graft_l2 ("antibody:graft_l2") |
| StringOptionKey const | l2_template ("antibody:l2_template") |
| BooleanOptionKey const | graft_l3 ("antibody:graft_l3") |
| StringOptionKey const | l3_template ("antibody:l3_template") |
| BooleanOptionKey const | graft_h1 ("antibody:graft_h1") |
| StringOptionKey const | h1_template ("antibody:h1_template") |
| BooleanOptionKey const | graft_h2 ("antibody:graft_h2") |
| StringOptionKey const | h2_template ("antibody:h2_template") |
| BooleanOptionKey const | graft_h3 ("antibody:graft_h3") |
| StringOptionKey const | h3_template ("antibody:h3_template") |
| StringOptionKey const | light_heavy_template ("antibody:light_heavy_template") |
| StringOptionKey const | frl_template ("antibody:frl_template") |
| StringOptionKey const | frh_template ("antibody:frh_template") |
| BooleanOptionKey const | h3_no_stem_graft ("antibody:h3_no_stem_graft") |
| BooleanOptionKey const | packonly_after_graft ("antibody:packonly_after_graft") |
| BooleanOptionKey const | stem_optimize ("antibody:stem_optimize") |
| IntegerOptionKey const | stem_optimize_size ("antibody:stem_optimize_size") |
| StringOptionKey const | preprocessing_script_version ("antibody:preprocessing_script_version") |
| BooleanOptionKey const | model_h3 ("antibody:model_h3") |
| BooleanOptionKey const | snugfit ("antibody:snugfit") |
| BooleanOptionKey const | refine_h3 ("antibody:refine_h3") |
| BooleanOptionKey const | h3_filter ("antibody:h3_filter") |
| RealOptionKey const | h3_filter_tolerance ("antibody:h3_filter_tolerance") |
| BooleanOptionKey const | cter_insert ("antibody:cter_insert") |
| BooleanOptionKey const | flank_residue_min ("antibody:flank_residue_min") |
| BooleanOptionKey const | sc_min ("antibody:sc_min") |
| BooleanOptionKey const | rt_min ("antibody:rt_min") |
| BooleanOptionKey const | bad_nter ("antibody:bad_nter") |
| BooleanOptionKey const | extend_h3_before_modeling ("antibody:extend_h3_before_modeling") |
| BooleanOptionKey const | idealize_h3_stems_before_modeling ("antibody:idealize_h3_stems_before_modeling") |
| StringOptionKey const | remodel ("antibody:remodel") |
| StringOptionKey const | refine ("antibody:refine") |
| StringOptionKey const | centroid_refine ("antibody:centroid_refine") |
| BooleanOptionKey const | constrain_cter ("antibody:constrain_cter") |
| BooleanOptionKey const | constrain_vlvh_qq ("antibody:constrain_vlvh_qq") |
| BooleanOptionKey const | auto_generate_kink_constraint ("antibody:auto_generate_kink_constraint") |
| BooleanOptionKey const | all_atom_mode_kink_constraint ("antibody:all_atom_mode_kink_constraint") |
| BooleanOptionKey const | snug_loops ("antibody:snug_loops") |
| FileOptionKey const | input_fv ("antibody:input_fv") |
| BooleanOptionKey const | camelid ("antibody:camelid") |
| BooleanOptionKey const | camelid_constraints ("antibody:camelid_constraints") |
| BooleanOptionKey const | use_mean_cluster_cst_data ("antibody:use_mean_cluster_cst_data") |
| BooleanOptionKey const | force_use_of_cluster_csts_with_outliers ("antibody:force_use_of_cluster_csts_with_outliers") |
| IntegerOptionKey const | cluster_csts_stats_cutoff ("antibody:cluster_csts_stats_cutoff") |
| RealOptionKey const | general_dihedral_cst_phi_sd ("antibody:general_dihedral_cst_phi_sd") |
| RealOptionKey const | general_dihedral_cst_psi_sd ("antibody:general_dihedral_cst_psi_sd") |
| BooleanOptionKey const | allow_omega_mismatches_for_north_clusters ("antibody:allow_omega_mismatches_for_north_clusters") |
| StringOptionKey const | prefix ("antibody:prefix") |
| StringOptionKey const | grafting_database ("antibody:grafting_database") |
| StringOptionKey const | blastp ("antibody:blastp") |
| BooleanOptionKey const | exclude_homologs ("antibody:exclude_homologs") |
| RealOptionKey const | exclude_homologs_cdr_cutoff ("antibody:exclude_homologs_cdr_cutoff") |
| RealOptionKey const | exclude_homologs_fr_cutoff ("antibody:exclude_homologs_fr_cutoff") |
| RealOptionKey const | ocd_cutoff ("antibody:ocd_cutoff") |
| IntegerOptionKey const | n_multi_templates ("antibody:n_multi_templates") |
| BooleanOptionKey const antibody::all_atom_mode_kink_constraint | ( | "antibody:all_atom_mode_kink_constraint" | ) |
| BooleanOptionKey const antibody::allow_omega_mismatches_for_north_clusters | ( | "antibody:allow_omega_mismatches_for_north_clusters" | ) |
| BooleanOptionKey const antibody::antibody | ( | "antibody" | ) |
| BooleanOptionKey const antibody::auto_generate_kink_constraint | ( | "antibody:auto_generate_kink_constraint" | ) |
| BooleanOptionKey const antibody::bad_nter | ( | "antibody:bad_nter" | ) |
| StringOptionKey const antibody::blastp | ( | "antibody:blastp" | ) |
| BooleanOptionKey const antibody::camelid | ( | "antibody:camelid" | ) |
| BooleanOptionKey const antibody::camelid_constraints | ( | "antibody:camelid_constraints" | ) |
| StringOptionKey const antibody::cdr_definition | ( | "antibody:cdr_definition" | ) |
| StringOptionKey const antibody::centroid_refine | ( | "antibody:centroid_refine" | ) |
| BooleanOptionKey const antibody::check_cdr_chainbreaks | ( | "antibody:check_cdr_chainbreaks" | ) |
| BooleanOptionKey const antibody::check_cdr_pep_bond_geom | ( | "antibody:check_cdr_pep_bond_geom" | ) |
| IntegerOptionKey const antibody::cluster_csts_stats_cutoff | ( | "antibody:cluster_csts_stats_cutoff" | ) |
| BooleanOptionKey const antibody::constrain_cter | ( | "antibody:constrain_cter" | ) |
| BooleanOptionKey const antibody::constrain_vlvh_qq | ( | "antibody:constrain_vlvh_qq" | ) |
| BooleanOptionKey const antibody::cter_insert | ( | "antibody:cter_insert" | ) |
| BooleanOptionKey const antibody::exclude_homologs | ( | "antibody:exclude_homologs" | ) |
| RealOptionKey const antibody::exclude_homologs_cdr_cutoff | ( | "antibody:exclude_homologs_cdr_cutoff" | ) |
| RealOptionKey const antibody::exclude_homologs_fr_cutoff | ( | "antibody:exclude_homologs_fr_cutoff" | ) |
| BooleanOptionKey const antibody::extend_h3_before_modeling | ( | "antibody:extend_h3_before_modeling" | ) |
| BooleanOptionKey const antibody::flank_residue_min | ( | "antibody:flank_residue_min" | ) |
| BooleanOptionKey const antibody::force_use_of_cluster_csts_with_outliers | ( | "antibody:force_use_of_cluster_csts_with_outliers" | ) |
| StringOptionKey const antibody::frh_template | ( | "antibody:frh_template" | ) |
| StringOptionKey const antibody::frl_template | ( | "antibody:frl_template" | ) |
| RealOptionKey const antibody::general_dihedral_cst_phi_sd | ( | "antibody:general_dihedral_cst_phi_sd" | ) |
| RealOptionKey const antibody::general_dihedral_cst_psi_sd | ( | "antibody:general_dihedral_cst_psi_sd" | ) |
| BooleanOptionKey const antibody::graft_h1 | ( | "antibody:graft_h1" | ) |
| BooleanOptionKey const antibody::graft_h2 | ( | "antibody:graft_h2" | ) |
| BooleanOptionKey const antibody::graft_h3 | ( | "antibody:graft_h3" | ) |
| BooleanOptionKey const antibody::graft_l1 | ( | "antibody:graft_l1" | ) |
| BooleanOptionKey const antibody::graft_l2 | ( | "antibody:graft_l2" | ) |
| BooleanOptionKey const antibody::graft_l3 | ( | "antibody:graft_l3" | ) |
| StringOptionKey const antibody::grafting_database | ( | "antibody:grafting_database" | ) |
| StringOptionKey const antibody::h1_template | ( | "antibody:h1_template" | ) |
| StringOptionKey const antibody::h2_template | ( | "antibody:h2_template" | ) |
| BooleanOptionKey const antibody::h3_filter | ( | "antibody:h3_filter" | ) |
| RealOptionKey const antibody::h3_filter_tolerance | ( | "antibody:h3_filter_tolerance" | ) |
| BooleanOptionKey const antibody::h3_no_stem_graft | ( | "antibody:h3_no_stem_graft" | ) |
| StringOptionKey const antibody::h3_template | ( | "antibody:h3_template" | ) |
| BooleanOptionKey const antibody::idealize_h3_stems_before_modeling | ( | "antibody:idealize_h3_stems_before_modeling" | ) |
| FileOptionKey const antibody::input_fv | ( | "antibody:input_fv" | ) |
| StringOptionKey const antibody::l1_template | ( | "antibody:l1_template" | ) |
| StringOptionKey const antibody::l2_template | ( | "antibody:l2_template" | ) |
| StringOptionKey const antibody::l3_template | ( | "antibody:l3_template" | ) |
| StringOptionKey const antibody::light_chain | ( | "antibody:light_chain" | ) |
| StringOptionKey const antibody::light_heavy_template | ( | "antibody:light_heavy_template" | ) |
| BooleanOptionKey const antibody::model_h3 | ( | "antibody:model_h3" | ) |
| IntegerOptionKey const antibody::n_multi_templates | ( | "antibody:n_multi_templates" | ) |
| StringOptionKey const antibody::numbering_scheme | ( | "antibody:numbering_scheme" | ) |
| RealOptionKey const antibody::ocd_cutoff | ( | "antibody:ocd_cutoff" | ) |
| BooleanOptionKey const antibody::packonly_after_graft | ( | "antibody:packonly_after_graft" | ) |
| StringOptionKey const antibody::prefix | ( | "antibody:prefix" | ) |
| StringOptionKey const antibody::preprocessing_script_version | ( | "antibody:preprocessing_script_version" | ) |
| StringOptionKey const antibody::refine | ( | "antibody:refine" | ) |
| BooleanOptionKey const antibody::refine_h3 | ( | "antibody:refine_h3" | ) |
| StringOptionKey const antibody::remodel | ( | "antibody:remodel" | ) |
| BooleanOptionKey const antibody::rt_min | ( | "antibody:rt_min" | ) |
| BooleanOptionKey const antibody::sc_min | ( | "antibody:sc_min" | ) |
| BooleanOptionKey const antibody::snug_loops | ( | "antibody:snug_loops" | ) |
| BooleanOptionKey const antibody::snugfit | ( | "antibody:snugfit" | ) |
| BooleanOptionKey const antibody::stem_optimize | ( | "antibody:stem_optimize" | ) |
| IntegerOptionKey const antibody::stem_optimize_size | ( | "antibody:stem_optimize_size" | ) |
| BooleanOptionKey const antibody::use_mean_cluster_cst_data | ( | "antibody:use_mean_cluster_cst_data" | ) |
1.8.7