Rosetta  3.7
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Properties Friends Macros Pages
Variables
basic::options::OptionKeys::inout::dbms Namespace Reference

Variables

BooleanOptionKey const dbms
 
StringOptionKey const mode
 
StringOptionKey const database_name
 
StringOptionKey const pq_schema
 
StringOptionKey const host
 
StringOptionKey const user
 
StringOptionKey const password
 
IntegerOptionKey const port
 
BooleanOptionKey const readonly
 
BooleanOptionKey const separate_db_per_mpi_process
 
IntegerOptionKey const database_partition
 
BooleanOptionKey const use_compact_residue_schema
 
BooleanOptionKey const retry_failed_reads
 
PathOptionKey const path
 

Variable Documentation

StringOptionKey const basic::options::OptionKeys::inout::dbms::database_name
IntegerOptionKey const basic::options::OptionKeys::inout::dbms::database_partition
BooleanOptionKey const basic::options::OptionKeys::inout::dbms::dbms

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::inout::dbms::host
StringOptionKey const basic::options::OptionKeys::inout::dbms::mode

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::inout::dbms::password
PathOptionKey const basic::options::OptionKeys::inout::dbms::path

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::inout::dbms::port
StringOptionKey const basic::options::OptionKeys::inout::dbms::pq_schema
BooleanOptionKey const basic::options::OptionKeys::inout::dbms::readonly

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::inout::dbms::retry_failed_reads

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::inout::dbms::separate_db_per_mpi_process

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::inout::dbms::use_compact_residue_schema

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::inout::dbms::user

Referenced by utility::options::OptionCollection::add_built_in_options(), apps::public1::scenarios::chemically_conjugated_docking::add_extra_bodies(), add_rosetta_options_0(), align_pdbs(), UBQ_GTPaseMover::analyze_and_filter(), UBQ_GTPase_disulfide_Mover::analyze_and_filter(), UBQ_E2Mover::analyze_and_filter(), ViewMembraneProteinMover::apply(), Minimize::apply(), ExposedStrandMover::apply(), HDdesignMover::apply(), calc_rms_test(), calculate_pairwise_RMSD(), CaToAllAtom::CaToAllAtom(), HDdesignMover::cloak_and_setup(), cluster_outfile_test(), cluster_test(), compute_chem_shift_RMSD(), CoupledMovesProtocol::CoupledMovesProtocol(), create_rna_vall_torsions_test(), create_scorefxn(), create_theozyme_pdb(), cs_rosetta_rna_pdb(), basic::database::db_partition_from_options(), supercharge::design_supercharge(), supercharge::design_supercharge_AvNAPSA(), extract_pdbs_test(), fill_designable_set(), filter_combine_long_loop(), FragmentAssemblyMover::FragmentAssemblyMover(), basic::database::full_cache_name(), gen_pep_bb_sequential(), basic::database::get_db_session(), utility::sql_database::DatabaseSessionManager::get_session_mysql(), utility::sql_database::DatabaseSessionManager::get_session_postgres(), graft_pdb(), import_and_dump_pdb(), UBQ_GTPase_disulfide_Mover::init_on_new_input(), UBQ_GTPaseMover::init_on_new_input(), UBQ_E2Mover::init_on_new_input(), PhProtocol::init_options(), initialize_native_pose(), initialize_peptide(), basic::options::int2afteroption(), basic::options::intafteroption(), utility::options::OptionCollection::load(), main(), make_1mer_frags(), match_main(), MC_run(), mg_modeler_test(), minimize_with_constraints(), my_main(), MyScoreMover::MyScoreMover(), nucleobase_probe_score_test(), optimize_pose(), basic::options::optional_positive_intafteroption(), basic::database::parse_database_connection(), pdb_to_silent_file(), pep_phipsi_analysis(), pep_rmsd_analysis(), post_rebuild_bulge_assembly(), print_pep_analysis(), print_pep_csts(), basic::options::process(), quick_score_test(), read_input_weights(), read_native_sequence_for_entity_elements(), read_pose(), read_structures(), read_thickness(), basic::options::real2afteroption(), basic::options::real3afteroption(), basic::options::realafteroption(), rebuild_test(), rhiju_pdbstats(), rna_build_helix_test(), rna_design_test(), rna_fullatom_minimize_test(), rna_sample_virtual_sugar(), rna_score_test(), rna_thread_test(), run(), DockFragmentsMover::run(), ScoreFragmentSetMover::run(), FragmentAssemblyMover::run(), SolutionRescoreMover::run(), run_mc(), run_pep_prep(), RunPepSpec(), sequence_tolerance_main(), supercharge::set_surface(), setup_ca_constraints(), setup_mask(), setup_segment_insert(), zinc1_homodimer_design::setup_taskfactory(), zinc2_homodimer_design::setup_taskfactory_scorefunction_movers(), setup_tf(), slice_ellipsoid_envelope(), slice_sample_res_and_surrounding(), basic::options::start_files(), stepwise_monte_carlo(), basic::options::stringafteroption(), superimpose_pdb(), swa_rna_cluster(), swa_rna_sample(), HDdesignMover::task_constraint_setup(), and basic::options::truefalseoption().