rna_helix.cc File Reference

#include <core/scoring/rms_util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/pose/annotated_sequence.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/stepwise/modeler/rna/helix/RNA_HelixAssembler.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/init/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <utility/exit.hh>
#include <numeric/xyzVector.hh>
#include <ObjexxFCL/string.functions.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	rna_build_helix_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, basic::options::OptionKeys::magnesium::montecarlo::dump, basic::init(), utility::excn::EXCN_Base::msg(), my_main(), NEW_OPT, options, and basic::options::OptionKeys::in::file::seq.

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, options, and rna_build_helix_test().

Referenced by main().

void rna_build_helix_test

(

)

References basic::options::OptionKeys::chemical::chemical, basic::options::OptionKeys::rna::corrected_geo, pyrosetta::create_score_function, basic::options::OptionKeys::magnesium::montecarlo::dump, in::file::fasta(), pyrosetta::get_score_function, ObjexxFCL::lead_zero_string_of(), local::nstruct, out::nstruct(), out::file::o(), option, options, clean_pdb_keep_ligand::outfile, basic::options::OptionKeys::ddg::output_silent, app.surface_docking.surface_docking::pose, basic::options::OptionKeys::in::file::s, PyMOL_demo::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::in::file::seq, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::in::file::silent, out::file::silent(), tag, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and basic::options::OptionKeys::score::weights.

Referenced by my_main().