src.initialization Namespace Reference

Functions
def	rosetta_database_from_env
def	init

Function Documentation

def src.initialization.init	(		options = '-ex1 -ex2aro',
			extra_options = '',
			set_logging_handler = True
	)

Initialize Rosetta.  Includes core data and global options.

options string with default Rosetta command-line options args.
        (default: '-ex1 -ex2aro')
kargs -
    extra_options - Extra command line options to pass rosetta init.
                    (default None)
    set_logging_handler - Route rosetta tracing through logging logger 'rosetta'.
                    (default True)

Examples:
    init()                     # uses default flags
    init(extra_options='-pH')  # adds flags to supplement the default
    init('-pH -database /home/me/pyrosetta/rosetta_database')  # overrides default flags - be sure to include the dB last

References src.initialization.rosetta_database_from_env().

def src.initialization.rosetta_database_from_env

(

)

Read rosetta database directory from environment or standard install locations.

Returns database path if found, else None.

Referenced by src.initialization.init().