cluster Namespace Reference

Functions
BooleanOptionKey const	cluster ("cluster")
BooleanOptionKey const	lite ("cluster:lite")
RealOptionKey const	input_score_filter ("cluster:input_score_filter")
RealOptionKey const	output_score_filter ("cluster:output_score_filter")
IntegerVectorOptionKey const	exclude_res ("cluster:exclude_res")
RealOptionKey const	thinout_factor ("cluster:thinout_factor")
RealOptionKey const	radius ("cluster:radius")
IntegerOptionKey const	limit_cluster_size ("cluster:limit_cluster_size")
RealOptionKey const	limit_cluster_size_percent ("cluster:limit_cluster_size_percent")
RealOptionKey const	random_limit_cluster_size_percent ("cluster:random_limit_cluster_size_percent")
IntegerOptionKey const	limit_clusters ("cluster:limit_clusters")
IntegerOptionKey const	limit_total_structures ("cluster:limit_total_structures")
IntegerOptionKey const	max_total_cluster ("cluster:max_total_cluster")
BooleanOptionKey const	gdtmm ("cluster:gdtmm")
BooleanOptionKey const	skip_align ("cluster:skip_align")
BooleanOptionKey const	sort_groups_by_energy ("cluster:sort_groups_by_energy")
BooleanOptionKey const	sort_groups_by_size ("cluster:sort_groups_by_size")
BooleanOptionKey const	remove_singletons ("cluster:remove_singletons")
BooleanOptionKey const	export_only_low ("cluster:export_only_low")
BooleanOptionKey const	remove_highest_energy_member ("cluster:remove_highest_energy_member")
BooleanOptionKey const	idealize_final_structures ("cluster:idealize_final_structures")
IntegerOptionKey const	limit_dist_matrix ("cluster:limit_dist_matrix")
BooleanOptionKey const	make_ensemble_cst ("cluster:make_ensemble_cst")
BooleanOptionKey const	hotspot_hash ("cluster:hotspot_hash")
BooleanOptionKey const	loops ("cluster:loops")
RealOptionKey const	population_weight ("cluster:population_weight")
StringOptionKey const	template_scores ("cluster:template_scores")
IntegerOptionKey const	K_level ("cluster:K_level")
RealVectorOptionKey const	K_radius ("cluster:K_radius")
IntegerVectorOptionKey const	K_n_cluster ("cluster:K_n_cluster")
StringVectorOptionKey const	K_style ("cluster:K_style")
IntegerOptionKey const	K_n_sub ("cluster:K_n_sub")
IntegerOptionKey const	K_deque_size ("cluster:K_deque_size")
IntegerOptionKey const	K_deque_level ("cluster:K_deque_level")
BooleanOptionKey const	K_redundant ("cluster:K_redundant")
BooleanOptionKey const	K_not_fit_xyz ("cluster:K_not_fit_xyz")
BooleanOptionKey const	K_save_headers ("cluster:K_save_headers")
RealOptionKey const	score_diff_cut ("cluster:score_diff_cut")
BooleanOptionKey const	auto_tune ("cluster:auto_tune")
BooleanOptionKey const	write_centers ("cluster:write_centers")

Function Documentation

BooleanOptionKey const cluster::auto_tune

(

"cluster:auto_tune"

)

Referenced by main().

BooleanOptionKey const cluster::cluster

(

"cluster"

)

IntegerVectorOptionKey const cluster::exclude_res

(

"cluster:exclude_res"

)

BooleanOptionKey const cluster::export_only_low

(

"cluster:export_only_low"

)

BooleanOptionKey const cluster::gdtmm

(

"cluster:gdtmm"

)

BooleanOptionKey const cluster::hotspot_hash

(

"cluster:hotspot_hash"

)

BooleanOptionKey const cluster::idealize_final_structures

(

"cluster:idealize_final_structures"

)

RealOptionKey const cluster::input_score_filter

(

"cluster:input_score_filter"

)

IntegerOptionKey const cluster::K_deque_level

(

"cluster:K_deque_level"

)

IntegerOptionKey const cluster::K_deque_size

(

"cluster:K_deque_size"

)

IntegerOptionKey const cluster::K_level

(

"cluster:K_level"

)

IntegerVectorOptionKey const cluster::K_n_cluster

(

"cluster:K_n_cluster"

)

IntegerOptionKey const cluster::K_n_sub

(

"cluster:K_n_sub"

)

BooleanOptionKey const cluster::K_not_fit_xyz

(

"cluster:K_not_fit_xyz"

)

RealVectorOptionKey const cluster::K_radius

(

"cluster:K_radius"

)

BooleanOptionKey const cluster::K_redundant

(

"cluster:K_redundant"

)

BooleanOptionKey const cluster::K_save_headers

(

"cluster:K_save_headers"

)

StringVectorOptionKey const cluster::K_style

(

"cluster:K_style"

)

IntegerOptionKey const cluster::limit_cluster_size

(

"cluster:limit_cluster_size"

)

Referenced by register_options().

RealOptionKey const cluster::limit_cluster_size_percent

(

"cluster:limit_cluster_size_percent"

)

IntegerOptionKey const cluster::limit_clusters

(

"cluster:limit_clusters"

)

IntegerOptionKey const cluster::limit_dist_matrix

(

"cluster:limit_dist_matrix"

)

IntegerOptionKey const cluster::limit_total_structures

(

"cluster:limit_total_structures"

)

BooleanOptionKey const cluster::lite

(

"cluster:lite"

)

BooleanOptionKey const cluster::loops

(

"cluster:loops"

)

BooleanOptionKey const cluster::make_ensemble_cst

(

"cluster:make_ensemble_cst"

)

IntegerOptionKey const cluster::max_total_cluster

(

"cluster:max_total_cluster"

)

RealOptionKey const cluster::output_score_filter

(

"cluster:output_score_filter"

)

RealOptionKey const cluster::population_weight

(

"cluster:population_weight"

)

RealOptionKey const cluster::radius

(

"cluster:radius"

)

Referenced by main().

RealOptionKey const cluster::random_limit_cluster_size_percent

(

"cluster:random_limit_cluster_size_percent"

)

BooleanOptionKey const cluster::remove_highest_energy_member

(

"cluster:remove_highest_energy_member"

)

BooleanOptionKey const cluster::remove_singletons

(

"cluster:remove_singletons"

)

RealOptionKey const cluster::score_diff_cut

(

"cluster:score_diff_cut"

)

Referenced by main().

BooleanOptionKey const cluster::skip_align

(

"cluster:skip_align"

)

BooleanOptionKey const cluster::sort_groups_by_energy

(

"cluster:sort_groups_by_energy"

)

BooleanOptionKey const cluster::sort_groups_by_size

(

"cluster:sort_groups_by_size"

)

StringOptionKey const cluster::template_scores

(

"cluster:template_scores"

)

RealOptionKey const cluster::thinout_factor

(

"cluster:thinout_factor"

)

BooleanOptionKey const cluster::write_centers

(

"cluster:write_centers"

)