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Rosetta
3.7
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Rosetta
3.7
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Functions | |
| BooleanOptionKey const | cyclic_peptide ("cyclic_peptide") |
| StringOptionKey const | rand_checkpoint_file ("cyclic_peptide:rand_checkpoint_file") |
| StringOptionKey const | checkpoint_file ("cyclic_peptide:checkpoint_file") |
| StringOptionKey const | checkpoint_job_identifier ("cyclic_peptide:checkpoint_job_identifier") |
| StringOptionKey const | default_rama_sampling_table ("cyclic_peptide:default_rama_sampling_table") |
| StringVectorOptionKey const | rama_sampling_table_by_res ("cyclic_peptide:rama_sampling_table_by_res") |
| StringOptionKey const | sequence_file ("cyclic_peptide:sequence_file") |
| IntegerOptionKey const | genkic_closure_attempts ("cyclic_peptide:genkic_closure_attempts") |
| IntegerOptionKey const | genkic_min_solution_count ("cyclic_peptide:genkic_min_solution_count") |
| BooleanOptionKey const | cyclic_permutations ("cyclic_peptide:cyclic_permutations") |
| BooleanOptionKey const | use_rama_filter ("cyclic_peptide:use_rama_filter") |
| RealOptionKey const | rama_cutoff ("cyclic_peptide:rama_cutoff") |
| RealOptionKey const | high_hbond_weight_multiplier ("cyclic_peptide:high_hbond_weight_multiplier") |
| RealOptionKey const | min_genkic_hbonds ("cyclic_peptide:min_genkic_hbonds") |
| RealOptionKey const | min_final_hbonds ("cyclic_peptide:min_final_hbonds") |
| RealOptionKey const | hbond_energy_cutoff ("cyclic_peptide:hbond_energy_cutoff") |
| BooleanOptionKey const | do_not_count_adjacent_res_hbonds ("cyclic_peptide:do_not_count_adjacent_res_hbonds") |
| IntegerOptionKey const | fast_relax_rounds ("cyclic_peptide:fast_relax_rounds") |
| BooleanOptionKey const | count_sc_hbonds ("cyclic_peptide:count_sc_hbonds") |
| BooleanOptionKey const | require_disulfides ("cyclic_peptide:require_disulfides") |
| RealOptionKey const | disulf_cutoff_prerelax ("cyclic_peptide:disulf_cutoff_prerelax") |
| RealOptionKey const | disulf_cutoff_postrelax ("cyclic_peptide:disulf_cutoff_postrelax") |
| RealVectorOptionKey const | user_set_alpha_dihedrals ("cyclic_peptide:user_set_alpha_dihedrals") |
| RealOptionKey const | user_set_alpha_dihedral_perturbation ("cyclic_peptide:user_set_alpha_dihedral_perturbation") |
| BooleanOptionKey const | filter_oversaturated_hbond_acceptors ("cyclic_peptide:filter_oversaturated_hbond_acceptors") |
| RealOptionKey const | hbond_acceptor_energy_cutoff ("cyclic_peptide:hbond_acceptor_energy_cutoff") |
| BooleanOptionKey const | design_peptide ("cyclic_peptide:design_peptide") |
| FileOptionKey const | allowed_residues_by_position ("cyclic_peptide:allowed_residues_by_position") |
| BooleanOptionKey const | prohibit_D_at_negative_phi ("cyclic_peptide:prohibit_D_at_negative_phi") |
| BooleanOptionKey const | prohibit_L_at_positive_phi ("cyclic_peptide:prohibit_L_at_positive_phi") |
| FileOptionKey const | L_alpha_comp_file ("cyclic_peptide:L_alpha_comp_file") |
| FileOptionKey const | D_alpha_comp_file ("cyclic_peptide:D_alpha_comp_file") |
| FileOptionKey const | L_beta_comp_file ("cyclic_peptide:L_beta_comp_file") |
| FileOptionKey const | D_beta_comp_file ("cyclic_peptide:D_beta_comp_file") |
| IntegerVectorOptionKey const | MPI_processes_by_level ("cyclic_peptide:MPI_processes_by_level") |
| IntegerVectorOptionKey const | MPI_batchsize_by_level ("cyclic_peptide:MPI_batchsize_by_level") |
| StringOptionKey const | MPI_sort_by ("cyclic_peptide:MPI_sort_by") |
| BooleanOptionKey const | MPI_choose_highest ("cyclic_peptide:MPI_choose_highest") |
| RealOptionKey const | MPI_output_fraction ("cyclic_peptide:MPI_output_fraction") |
| IntegerOptionKey const | MPI_stop_after_time ("cyclic_peptide:MPI_stop_after_time") |
| FileOptionKey const cyclic_peptide::allowed_residues_by_position | ( | "cyclic_peptide:allowed_residues_by_position" | ) |
| StringOptionKey const cyclic_peptide::checkpoint_file | ( | "cyclic_peptide:checkpoint_file" | ) |
| StringOptionKey const cyclic_peptide::checkpoint_job_identifier | ( | "cyclic_peptide:checkpoint_job_identifier" | ) |
| BooleanOptionKey const cyclic_peptide::count_sc_hbonds | ( | "cyclic_peptide:count_sc_hbonds" | ) |
| BooleanOptionKey const cyclic_peptide::cyclic_peptide | ( | "cyclic_peptide" | ) |
| BooleanOptionKey const cyclic_peptide::cyclic_permutations | ( | "cyclic_peptide:cyclic_permutations" | ) |
| FileOptionKey const cyclic_peptide::D_alpha_comp_file | ( | "cyclic_peptide:D_alpha_comp_file" | ) |
| FileOptionKey const cyclic_peptide::D_beta_comp_file | ( | "cyclic_peptide:D_beta_comp_file" | ) |
| StringOptionKey const cyclic_peptide::default_rama_sampling_table | ( | "cyclic_peptide:default_rama_sampling_table" | ) |
| BooleanOptionKey const cyclic_peptide::design_peptide | ( | "cyclic_peptide:design_peptide" | ) |
| RealOptionKey const cyclic_peptide::disulf_cutoff_postrelax | ( | "cyclic_peptide:disulf_cutoff_postrelax" | ) |
| RealOptionKey const cyclic_peptide::disulf_cutoff_prerelax | ( | "cyclic_peptide:disulf_cutoff_prerelax" | ) |
| BooleanOptionKey const cyclic_peptide::do_not_count_adjacent_res_hbonds | ( | "cyclic_peptide:do_not_count_adjacent_res_hbonds" | ) |
| IntegerOptionKey const cyclic_peptide::fast_relax_rounds | ( | "cyclic_peptide:fast_relax_rounds" | ) |
| BooleanOptionKey const cyclic_peptide::filter_oversaturated_hbond_acceptors | ( | "cyclic_peptide:filter_oversaturated_hbond_acceptors" | ) |
| IntegerOptionKey const cyclic_peptide::genkic_closure_attempts | ( | "cyclic_peptide:genkic_closure_attempts" | ) |
| IntegerOptionKey const cyclic_peptide::genkic_min_solution_count | ( | "cyclic_peptide:genkic_min_solution_count" | ) |
| RealOptionKey const cyclic_peptide::hbond_acceptor_energy_cutoff | ( | "cyclic_peptide:hbond_acceptor_energy_cutoff" | ) |
| RealOptionKey const cyclic_peptide::hbond_energy_cutoff | ( | "cyclic_peptide:hbond_energy_cutoff" | ) |
| RealOptionKey const cyclic_peptide::high_hbond_weight_multiplier | ( | "cyclic_peptide:high_hbond_weight_multiplier" | ) |
| FileOptionKey const cyclic_peptide::L_alpha_comp_file | ( | "cyclic_peptide:L_alpha_comp_file" | ) |
| FileOptionKey const cyclic_peptide::L_beta_comp_file | ( | "cyclic_peptide:L_beta_comp_file" | ) |
| RealOptionKey const cyclic_peptide::min_final_hbonds | ( | "cyclic_peptide:min_final_hbonds" | ) |
| RealOptionKey const cyclic_peptide::min_genkic_hbonds | ( | "cyclic_peptide:min_genkic_hbonds" | ) |
| IntegerVectorOptionKey const cyclic_peptide::MPI_batchsize_by_level | ( | "cyclic_peptide:MPI_batchsize_by_level" | ) |
| BooleanOptionKey const cyclic_peptide::MPI_choose_highest | ( | "cyclic_peptide:MPI_choose_highest" | ) |
| RealOptionKey const cyclic_peptide::MPI_output_fraction | ( | "cyclic_peptide:MPI_output_fraction" | ) |
| IntegerVectorOptionKey const cyclic_peptide::MPI_processes_by_level | ( | "cyclic_peptide:MPI_processes_by_level" | ) |
| StringOptionKey const cyclic_peptide::MPI_sort_by | ( | "cyclic_peptide:MPI_sort_by" | ) |
| IntegerOptionKey const cyclic_peptide::MPI_stop_after_time | ( | "cyclic_peptide:MPI_stop_after_time" | ) |
| BooleanOptionKey const cyclic_peptide::prohibit_D_at_negative_phi | ( | "cyclic_peptide:prohibit_D_at_negative_phi" | ) |
| BooleanOptionKey const cyclic_peptide::prohibit_L_at_positive_phi | ( | "cyclic_peptide:prohibit_L_at_positive_phi" | ) |
| RealOptionKey const cyclic_peptide::rama_cutoff | ( | "cyclic_peptide:rama_cutoff" | ) |
| StringVectorOptionKey const cyclic_peptide::rama_sampling_table_by_res | ( | "cyclic_peptide:rama_sampling_table_by_res" | ) |
| StringOptionKey const cyclic_peptide::rand_checkpoint_file | ( | "cyclic_peptide:rand_checkpoint_file" | ) |
| BooleanOptionKey const cyclic_peptide::require_disulfides | ( | "cyclic_peptide:require_disulfides" | ) |
| StringOptionKey const cyclic_peptide::sequence_file | ( | "cyclic_peptide:sequence_file" | ) |
| BooleanOptionKey const cyclic_peptide::use_rama_filter | ( | "cyclic_peptide:use_rama_filter" | ) |
| RealOptionKey const cyclic_peptide::user_set_alpha_dihedral_perturbation | ( | "cyclic_peptide:user_set_alpha_dihedral_perturbation" | ) |
| RealVectorOptionKey const cyclic_peptide::user_set_alpha_dihedrals | ( | "cyclic_peptide:user_set_alpha_dihedrals" | ) |
1.8.7