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Rosetta
3.7
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Rosetta
3.7
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Functions | |
| BooleanOptionKey const | hybridize ("cm:hybridize") |
| IntegerVectorOptionKey const | starting_template ("cm:hybridize:starting_template") |
| BooleanOptionKey const | realign_domains ("cm:hybridize:realign_domains") |
| BooleanOptionKey const | realign_domains_stage2 ("cm:hybridize:realign_domains_stage2") |
| IntegerOptionKey const | add_non_init_chunks ("cm:hybridize:add_non_init_chunks") |
| RealOptionKey const | stage1_increase_cycles ("cm:hybridize:stage1_increase_cycles") |
| RealOptionKey const | stage2_increase_cycles ("cm:hybridize:stage2_increase_cycles") |
| RealOptionKey const | stage2min_increase_cycles ("cm:hybridize:stage2min_increase_cycles") |
| RealOptionKey const | stage1_probability ("cm:hybridize:stage1_probability") |
| BooleanOptionKey const | skip_stage2 ("cm:hybridize:skip_stage2") |
| BooleanOptionKey const | no_global_frame ("cm:hybridize:no_global_frame") |
| BooleanOptionKey const | linmin_only ("cm:hybridize:linmin_only") |
| IntegerOptionKey const | relax ("cm:hybridize:relax") |
| RealOptionKey const | frag_weight_aligned ("cm:hybridize:frag_weight_aligned") |
| IntegerOptionKey const | max_registry_shift ("cm:hybridize:max_registry_shift") |
| RealOptionKey const | frag_1mer_insertion_weight ("cm:hybridize:frag_1mer_insertion_weight") |
| RealOptionKey const | small_frag_insertion_weight ("cm:hybridize:small_frag_insertion_weight") |
| RealOptionKey const | big_frag_insertion_weight ("cm:hybridize:big_frag_insertion_weight") |
| BooleanOptionKey const | auto_frag_insertion_weight ("cm:hybridize:auto_frag_insertion_weight") |
| IntegerOptionKey const | stage1_1_cycles ("cm:hybridize:stage1_1_cycles") |
| IntegerOptionKey const | stage1_2_cycles ("cm:hybridize:stage1_2_cycles") |
| IntegerOptionKey const | stage1_3_cycles ("cm:hybridize:stage1_3_cycles") |
| IntegerOptionKey const | stage1_4_cycles ("cm:hybridize:stage1_4_cycles") |
| RealOptionKey const | stage2_temperature ("cm:hybridize:stage2_temperature") |
| StringOptionKey const | stage1_4_cenrot_score ("cm:hybridize:stage1_4_cenrot_score") |
| IntegerOptionKey const cm::hybridize::add_non_init_chunks | ( | "cm:hybridize:add_non_init_chunks" | ) |
| BooleanOptionKey const cm::hybridize::auto_frag_insertion_weight | ( | "cm:hybridize:auto_frag_insertion_weight" | ) |
| RealOptionKey const cm::hybridize::big_frag_insertion_weight | ( | "cm:hybridize:big_frag_insertion_weight" | ) |
| RealOptionKey const cm::hybridize::frag_1mer_insertion_weight | ( | "cm:hybridize:frag_1mer_insertion_weight" | ) |
| RealOptionKey const cm::hybridize::frag_weight_aligned | ( | "cm:hybridize:frag_weight_aligned" | ) |
| BooleanOptionKey const cm::hybridize::hybridize | ( | "cm:hybridize" | ) |
| BooleanOptionKey const cm::hybridize::linmin_only | ( | "cm:hybridize:linmin_only" | ) |
| IntegerOptionKey const cm::hybridize::max_registry_shift | ( | "cm:hybridize:max_registry_shift" | ) |
| BooleanOptionKey const cm::hybridize::no_global_frame | ( | "cm:hybridize:no_global_frame" | ) |
| BooleanOptionKey const cm::hybridize::realign_domains | ( | "cm:hybridize:realign_domains" | ) |
| BooleanOptionKey const cm::hybridize::realign_domains_stage2 | ( | "cm:hybridize:realign_domains_stage2" | ) |
| IntegerOptionKey const cm::hybridize::relax | ( | "cm:hybridize:relax" | ) |
| BooleanOptionKey const cm::hybridize::skip_stage2 | ( | "cm:hybridize:skip_stage2" | ) |
| RealOptionKey const cm::hybridize::small_frag_insertion_weight | ( | "cm:hybridize:small_frag_insertion_weight" | ) |
| IntegerOptionKey const cm::hybridize::stage1_1_cycles | ( | "cm:hybridize:stage1_1_cycles" | ) |
| IntegerOptionKey const cm::hybridize::stage1_2_cycles | ( | "cm:hybridize:stage1_2_cycles" | ) |
| IntegerOptionKey const cm::hybridize::stage1_3_cycles | ( | "cm:hybridize:stage1_3_cycles" | ) |
| StringOptionKey const cm::hybridize::stage1_4_cenrot_score | ( | "cm:hybridize:stage1_4_cenrot_score" | ) |
| IntegerOptionKey const cm::hybridize::stage1_4_cycles | ( | "cm:hybridize:stage1_4_cycles" | ) |
| RealOptionKey const cm::hybridize::stage1_increase_cycles | ( | "cm:hybridize:stage1_increase_cycles" | ) |
| RealOptionKey const cm::hybridize::stage1_probability | ( | "cm:hybridize:stage1_probability" | ) |
| RealOptionKey const cm::hybridize::stage2_increase_cycles | ( | "cm:hybridize:stage2_increase_cycles" | ) |
| RealOptionKey const cm::hybridize::stage2_temperature | ( | "cm:hybridize:stage2_temperature" | ) |
| RealOptionKey const cm::hybridize::stage2min_increase_cycles | ( | "cm:hybridize:stage2min_increase_cycles" | ) |
| IntegerVectorOptionKey const cm::hybridize::starting_template | ( | "cm:hybridize:starting_template" | ) |
1.8.7