toolbox.mutants Namespace Reference

Functions
def	pose_from_sequence
def	random_sequence
def	compare_mutants__
def	compare_sequences
def	compare_hbonds

Variables
string	protein_letters = 'ACDEFGHIKLMNPQRSTVWY'
list	nucleic_letters = ['A[ADE]','G[GUA]','C[CYT]','T[THY]']

Function Documentation

def toolbox.mutants.compare_hbonds	(		pose1,
			pose2,
			Ethresh = .5,
			display = False
	)

References ObjexxFCL.abs(), toolbox.get_hbonds(), ObjexxFCL.len(), ObjexxFCL.ljust(), name, src.PyMolLink.PyMOL_Mover, basic::options::OptionKeys::relax::range.range, and basic::options::OptionKeys::in::file.xyz.

def toolbox.mutants.compare_mutants__	(		pose1,
			pose2
	)

References basic::options::OptionKeys::relax::range.range.

def toolbox.mutants.compare_sequences	(		seq1,
			seq2
	)

References ObjexxFCL.len(), and basic::options::OptionKeys::relax::range.range.

def toolbox.mutants.pose_from_sequence	(		seq,
			res_type = 'fa_standard',
			name = '',
			chain_id = 'A'
	)

Returns a pose generated from amino acid single letters in  <seq>  using
the  <res_type>  ResidueType, the new pose's PDBInfo is named  <name>
and all residues have chain ID  <chain_id>

example:
    pose=pose_from_sequence('LIGAND')
See also:
    Pose
    make_pose_from_sequence
    pose_from_file
    pose_from_rcsb

References name, and basic::options::OptionKeys::relax::range.range.

def toolbox.mutants.random_sequence	(		length = 1,
			letters = protein_letters
	)

References extract_scores_and_constraints.join, ObjexxFCL.len(), and basic::options::OptionKeys::relax::range.range.

Variable Documentation

list toolbox.mutants.nucleic_letters = ['A[ADE]','G[GUA]','C[CYT]','T[THY]']

string toolbox.mutants.protein_letters = 'ACDEFGHIKLMNPQRSTVWY'