stepwise::monte_carlo Namespace Reference

Namespaces
	csa

Functions
BooleanOptionKey const	monte_carlo ("stepwise:monte_carlo")
BooleanOptionKey const	verbose_scores ("stepwise:monte_carlo:verbose_scores")
BooleanOptionKey const	skip_deletions ("stepwise:monte_carlo:skip_deletions")
BooleanOptionKey const	allow_internal_hinge_moves ("stepwise:monte_carlo:allow_internal_hinge_moves")
BooleanOptionKey const	allow_internal_local_moves ("stepwise:monte_carlo:allow_internal_local_moves")
BooleanOptionKey const	allow_skip_bulge ("stepwise:monte_carlo:allow_skip_bulge")
RealOptionKey const	skip_bulge_frequency ("stepwise:monte_carlo:skip_bulge_frequency")
RealOptionKey const	from_scratch_frequency ("stepwise:monte_carlo:from_scratch_frequency")
BooleanOptionKey const	allow_split_off ("stepwise:monte_carlo:allow_split_off")
IntegerOptionKey const	cycles ("stepwise:monte_carlo:cycles")
RealOptionKey const	temperature ("stepwise:monte_carlo:temperature")
RealOptionKey const	add_proposal_density_factor ("stepwise:monte_carlo:add_proposal_density_factor")
RealOptionKey const	add_delete_frequency ("stepwise:monte_carlo:add_delete_frequency")
RealOptionKey const	docking_frequency ("stepwise:monte_carlo:docking_frequency")
RealOptionKey const	submotif_frequency ("stepwise:monte_carlo:submotif_frequency")
RealOptionKey const	intermolecular_frequency ("stepwise:monte_carlo:intermolecular_frequency")
RealOptionKey const	minimize_single_res_frequency ("stepwise:monte_carlo:minimize_single_res_frequency")
BooleanOptionKey const	allow_variable_bond_geometry ("stepwise:monte_carlo:allow_variable_bond_geometry")
RealOptionKey const	switch_focus_frequency ("stepwise:monte_carlo:switch_focus_frequency")
RealOptionKey const	just_min_after_mutation_frequency ("stepwise:monte_carlo:just_min_after_mutation_frequency")
BooleanOptionKey const	local_redock_only ("stepwise:monte_carlo:local_redock_only")
BooleanOptionKey const	make_movie ("stepwise:monte_carlo:make_movie")
BooleanOptionKey const	recover_low ("stepwise:monte_carlo:recover_low")
BooleanOptionKey const	use_precomputed_library ("stepwise:monte_carlo:use_precomputed_library")
BooleanOptionKey const	allow_submotif_split ("stepwise:monte_carlo:allow_submotif_split")
BooleanOptionKey const	force_submotif_without_intervening_bulge ("stepwise:monte_carlo:force_submotif_without_intervening_bulge")
BooleanOptionKey const	use_first_jump_for_submotif ("stepwise:monte_carlo:use_first_jump_for_submotif")
RealOptionKey const	vary_loop_length_frequency ("stepwise:monte_carlo:vary_loop_length_frequency")

Function Documentation

RealOptionKey const stepwise::monte_carlo::add_delete_frequency

(

"stepwise:monte_carlo:add_delete_frequency"

)

RealOptionKey const stepwise::monte_carlo::add_proposal_density_factor

(

"stepwise:monte_carlo:add_proposal_density_factor"

)

BooleanOptionKey const stepwise::monte_carlo::allow_internal_hinge_moves

(

"stepwise:monte_carlo:allow_internal_hinge_moves"

)

BooleanOptionKey const stepwise::monte_carlo::allow_internal_local_moves

(

"stepwise:monte_carlo:allow_internal_local_moves"

)

BooleanOptionKey const stepwise::monte_carlo::allow_skip_bulge

(

"stepwise:monte_carlo:allow_skip_bulge"

)

BooleanOptionKey const stepwise::monte_carlo::allow_split_off

(

"stepwise:monte_carlo:allow_split_off"

)

BooleanOptionKey const stepwise::monte_carlo::allow_submotif_split

(

"stepwise:monte_carlo:allow_submotif_split"

)

BooleanOptionKey const stepwise::monte_carlo::allow_variable_bond_geometry

(

"stepwise:monte_carlo:allow_variable_bond_geometry"

)

IntegerOptionKey const stepwise::monte_carlo::cycles

(

"stepwise:monte_carlo:cycles"

)

RealOptionKey const stepwise::monte_carlo::docking_frequency

(

"stepwise:monte_carlo:docking_frequency"

)

BooleanOptionKey const stepwise::monte_carlo::force_submotif_without_intervening_bulge

(

"stepwise:monte_carlo:force_submotif_without_intervening_bulge"

)

RealOptionKey const stepwise::monte_carlo::from_scratch_frequency

(

"stepwise:monte_carlo:from_scratch_frequency"

)

RealOptionKey const stepwise::monte_carlo::intermolecular_frequency

(

"stepwise:monte_carlo:intermolecular_frequency"

)

RealOptionKey const stepwise::monte_carlo::just_min_after_mutation_frequency

(

"stepwise:monte_carlo:just_min_after_mutation_frequency"

)

BooleanOptionKey const stepwise::monte_carlo::local_redock_only

(

"stepwise:monte_carlo:local_redock_only"

)

BooleanOptionKey const stepwise::monte_carlo::make_movie

(

"stepwise:monte_carlo:make_movie"

)

RealOptionKey const stepwise::monte_carlo::minimize_single_res_frequency

(

"stepwise:monte_carlo:minimize_single_res_frequency"

)

BooleanOptionKey const stepwise::monte_carlo::monte_carlo

(

"stepwise:monte_carlo"

)

BooleanOptionKey const stepwise::monte_carlo::recover_low

(

"stepwise:monte_carlo:recover_low"

)

RealOptionKey const stepwise::monte_carlo::skip_bulge_frequency

(

"stepwise:monte_carlo:skip_bulge_frequency"

)

BooleanOptionKey const stepwise::monte_carlo::skip_deletions

(

"stepwise:monte_carlo:skip_deletions"

)

RealOptionKey const stepwise::monte_carlo::submotif_frequency

(

"stepwise:monte_carlo:submotif_frequency"

)

RealOptionKey const stepwise::monte_carlo::switch_focus_frequency

(

"stepwise:monte_carlo:switch_focus_frequency"

)

RealOptionKey const stepwise::monte_carlo::temperature

(

"stepwise:monte_carlo:temperature"

)

BooleanOptionKey const stepwise::monte_carlo::use_first_jump_for_submotif

(

"stepwise:monte_carlo:use_first_jump_for_submotif"

)

BooleanOptionKey const stepwise::monte_carlo::use_precomputed_library

(

"stepwise:monte_carlo:use_precomputed_library"

)

RealOptionKey const stepwise::monte_carlo::vary_loop_length_frequency

(

"stepwise:monte_carlo:vary_loop_length_frequency"

)

BooleanOptionKey const stepwise::monte_carlo::verbose_scores

(

"stepwise:monte_carlo:verbose_scores"

)