numeric::nls Namespace Reference

Classes
struct	lm_control_struct
struct	lm_status_struct

Functions
void	lm_printout_std (int n_par, const double *par, int m_dat, const void *, const double *fvec, int printflags, int iflag, int iter, int nfev)
void	lmmin (int n_par, double *par, int m_dat, const void *data, void(*evaluate)(const double *par, int m_dat, const void *data, double *fvec, int *info), lm_status_struct *status, void(*printout)(int n_par, const double *par, int m_dat, const void *data, const double *fvec, int printflags, int iflag, int iter, int nfev))
void	lm_lmpar (int n, double *r, int ldr, int *ipvt, double *diag, double *qtb, double delta, double *par, double *x, double *sdiag, double *aux, double *xdi)
void	lm_qrfac (int m, int n, double *a, int pivot, int *ipvt, double *rdiag, double *acnorm, double *wa)
void	lm_qrsolv (int n, double *r, int ldr, int *ipvt, double *diag, double *qtb, double *x, double *sdiag, double *wa)
void	lm_lmdif (int m, int n, double *x, double *fvec, double ftol, double xtol, double gtol, int maxfev, double epsfcn, double *diag, int mode, double factor, int *info, int *nfev, double *fjac, int *ipvt, double *qtf, double *wa1, double *wa2, double *wa3, double *wa4, void(*evaluate)(const double *par, int m_dat, const void *data, double *fvec, int *info), void(*printout)(int n_par, const double *par, int m_dat, const void *data, const double *fvec, int printflags, int iflag, int iter, int nfev), int printflags, const void *data)
double	lm_enorm (int n, const double *x)

Function Documentation

double numeric::nls::lm_enorm	(	int	n,
		const double *	x
	)

References LM_SQRT_DWARF, LM_SQRT_GIANT, basic::options::OptionKeys::stepwise::s1, basic::options::OptionKeys::stepwise::s2, and SQR.

Referenced by lm_lmdif(), lm_lmpar(), lm_printout_std(), lm_qrfac(), and lmmin().

void numeric::nls::lm_lmdif	(	int	m,
		int	n,
		double *	x,
		double *	fvec,
		double	ftol,
		double	xtol,
		double	gtol,
		int	maxfev,
		double	epsfcn,
		double *	diag,
		int	mode,
		double	factor,
		int *	info,
		int *	nfev,
		double *	fjac,
		int *	ipvt,
		double *	qtf,
		double *	wa1,
		double *	wa2,
		double *	wa3,
		double *	wa4,
		void(*)(const double *par, int m_dat, const void *data, double *fvec, int *info)	evaluate,
		void(*)(int n_par, const double *par, int m_dat, const void *data, const double *fvec, int printflags, int iflag, int iter, int nfev)	printout,
		int	printflags,
		const void *	data
	)

References app.delta_score_per_mutation::data, info(), basic::options::OptionKeys::mp::mutate_relax::iter, basic::options::OptionKeys::frags::j, LM_DWARF, lm_enorm(), lm_lmpar(), LM_MACHEP, lm_qrfac(), MAX, MIN, fmt::printf(), SQR, numeric::sum(), and x().

Referenced by lmmin().

void numeric::nls::lm_lmpar	(	int	n,
		double *	r,
		int	ldr,
		int *	ipvt,
		double *	diag,
		double *	qtb,
		double	delta,
		double *	par,
		double *	x,
		double *	sdiag,
		double *	aux,
		double *	xdi
	)

References basic::options::OptionKeys::mp::mutate_relax::iter, basic::options::OptionKeys::frags::j, LM_DWARF, lm_enorm(), lm_qrsolv(), MAX, MIN, fmt::printf(), and numeric::sum().

Referenced by lm_lmdif().

void numeric::nls::lm_printout_std	(	int	n_par,
		const double *	par,
		int	m_dat,
		const void *	,
		const double *	fvec,
		int	printflags,
		int	iflag,
		int	iter,
		int	nfev
	)

References lm_enorm(), and fmt::printf().

void numeric::nls::lm_qrfac	(	int	m,
		int	n,
		double *	a,
		int	pivot,
		int *	ipvt,
		double *	rdiag,
		double *	acnorm,
		double *	wa
	)

References basic::options::OptionKeys::frags::j, lm_enorm(), LM_MACHEP, MAX, MIN, fmt::printf(), SQR, and numeric::sum().

Referenced by lm_lmdif().

void numeric::nls::lm_qrsolv	(	int	n,
		double *	r,
		int	ldr,
		int *	ipvt,
		double *	diag,
		double *	qtb,
		double *	x,
		double *	sdiag,
		double *	wa
	)

References basic::options::OptionKeys::frags::j, fmt::printf(), SQR, and numeric::sum().

Referenced by lm_lmpar().

void numeric::nls::lmmin	(	int	n_par,
		double *	par,
		int	m_dat,
		const void *	data,
		void(*)(const double *par, int m_dat, const void *data, double *fvec, int *info)	evaluate,
		lm_status_struct *	status,
		void(*)(int n_par, const double *par, int m_dat, const void *data, const double *fvec, int printflags, int iflag, int iter, int nfev)	printout
	)

References app.delta_score_per_mutation::data, numeric::nls::lm_control_struct::epsilon, basic::options::OptionKeys::jumps::evaluate, numeric::nls::lm_status_struct::fnorm, numeric::nls::lm_control_struct::ftol, numeric::nls::lm_control_struct::gtol, numeric::nls::lm_status_struct::info, basic::options::OptionKeys::frags::j, lm_enorm(), lm_lmdif(), LM_USERTOL, numeric::nls::lm_control_struct::maxcall, numeric::nls::lm_status_struct::nfev, numeric::nls::lm_control_struct::printflags, numeric::nls::lm_control_struct::scale_diag, numeric::nls::lm_control_struct::stepbound, and numeric::nls::lm_control_struct::xtol.