thermal_sampler.cc File Reference

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/farna/setup/RNA_DeNovoParameters.hh>
#include <protocols/farna/util.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/recces/RECCES_Mover.hh>
#include <protocols/recces/options/RECCES_Options.hh>
#include <protocols/recces/util.hh>
#include <protocols/recces/setup_util.hh>
#include <protocols/recces/sampler/rna/MC_RNA_Suite.hh>
#include <protocols/recces/sampler/rna/MC_RNA_MultiSuite.hh>
#include <protocols/moves/SimulatedTempering.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <core/id/TorsionID.hh>
#include <protocols/recces/sampler/MC_OneTorsion.hh>
#include <protocols/recces/sampler/MC_Any.hh>
#include <protocols/recces/sampler/MC_Loop.hh>
#include <protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.hh>
#include <protocols/recces/sampler/util.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <numeric/random/random.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/recces.OptionKeys.gen.hh>

Functions
void	thermal_sampler ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::recces::thermal_sampling::angle_range_bb, basic::options::OptionKeys::recces::thermal_sampling::angle_range_chi, basic::options::OptionKeys::recces::thermal_sampling::angle_range_free_bb, basic::options::OptionKeys::recces::thermal_sampling::angle_range_free_chi, basic::options::OptionKeys::recces::thermal_sampling::bb_stdev, basic::options::OptionKeys::recces::thermal_sampling::chi_stdev, utility::io::oc::cout, full_model::cutpoint_open(), basic::options::OptionKeys::recces::dump_freq, basic::options::OptionKeys::matdes::dock::dump_pdb, basic::options::OptionKeys::recces::dump_silent, in::file::fasta(), basic::options::OptionKeys::recces::thermal_sampling::free_residues, devel::init(), in::file::input_res(), basic::options::OptionKeys::recces::thermal_sampling::loop_residues, utility::excn::EXCN_Base::msg(), my_main(), basic::options::OptionKeys::recces::n_cycle, option, options, basic::options::OptionKeys::recces::out_prefix, basic::options::OptionKeys::recces::out_torsions, in::file::s(), basic::options::OptionKeys::recces::thermal_sampling::sample_residues, basic::options::OptionKeys::recces::thermal_sampling::setup_base_pair_constraints, in::file::silent(), basic::options::OptionKeys::recces::st_weights, basic::options::OptionKeys::recces::thermal_sampling::standard_bb_stdev, in::file::tags(), basic::options::OptionKeys::recces::temps, and score::weights().

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and thermal_sampler().

Referenced by main().

void thermal_sampler

(

)

References pyrosetta::create_score_function, pyrosetta::get_score_function, option, options, demo.D010_Pose_structure::pose, basic::options::OptionKeys::recces::base_pair::recces, runtime_assert, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::inout::dbms::user, and score::weights().

Referenced by my_main().