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- j -
j() :
frags
jacobi_rotation() :
numeric
james() :
james
jd2() :
jd2
jd3() :
jd3
jdist_rerun() :
abinitio
job_definition_file() :
in::file
job_definition_schema() :
jd3
job_queue_ID() :
stepwise::rna
jobdist_miscfile_ext() :
run
jobname() :
lh
join() :
utility
jran() :
run
jscore_evaluator() :
evaluation
json_file_name() :
self-test
jump_change_frequency() :
rna::farna
jump_database() :
rna::farna::db
jump_histogram_binwidth() :
rna::farna::out
jump_histogram_binwidth_rotvector() :
rna::farna::out
jump_histogram_boxsize() :
rna::farna::out
jump_lib() :
jumps
jump_library_file() :
rna::farna
jump_move() :
relax
jump_nr() :
evaluation
jump_point_pairs() :
stepwise::rna
jump_res() :
full_model
jumpcut_files() :
smhybrid
jumping() :
cmiles::jumping
jumps() :
jumps
,
resample
just_calc_rmsd() :
score
just_min_after_mutation_frequency() :
stepwise::monte_carlo
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