|
| file | AddCavitiesMover.cc |
| |
| file | AddCavitiesMover.hh |
| |
| file | AddChainMover.cc |
| |
| file | AddChainMover.fwd.hh |
| | Add chain to an existing pose (as a new chain)
|
| |
| file | AddChainMover.hh |
| | switch the chain order
|
| |
| file | AddChainMoverCreator.hh |
| |
| file | AddConstraintsToCurrentConformationMover.cc |
| | Add constraints to the current pose conformation.
|
| |
| file | AddConstraintsToCurrentConformationMover.hh |
| | Add constraints to the current pose conformation.
|
| |
| file | AddConstraintsToCurrentConformationMoverCreator.hh |
| |
| file | AddJobPairData.cc |
| | A really simple mover that takes some data in through xml and appends it to the pose.
|
| |
| file | AddJobPairData.fwd.hh |
| | Forward Header file for the AddJobPairData Mover.
|
| |
| file | AddJobPairData.hh |
| | Header file for the AddJobPairData Mover.
|
| |
| file | AddJobPairDataCreator.hh |
| | MoverCreator definitions for the AddJobPairData mover.
|
| |
| file | AddPDBInfoMover.cc |
| |
| file | AddPDBInfoMover.fwd.hh |
| | Forward header file for AddPDBInfoMover.
|
| |
| file | AddPDBInfoMover.hh |
| |
| file | AddPDBInfoMoverCreator.hh |
| |
| file | AddResidueLabelMover.cc |
| |
| file | AddResidueLabelMover.fwd.hh |
| |
| file | AddResidueLabelMover.hh |
| |
| file | AddResidueLabelMoverCreator.hh |
| | This class will create instances of AddResidueLabelMover for the MoverFactory.
|
| |
| file | AlignChainMover.cc |
| |
| file | AlignChainMover.fwd.hh |
| |
| file | AlignChainMover.hh |
| | switch the chain order
|
| |
| file | AlignChainMoverCreator.hh |
| |
| file | BackboneMover.cc |
| | Method definitions for SmallMover and ShearMover.
|
| |
| file | BackboneMover.fwd.hh |
| | BackboneMover forward declarations header.
|
| |
| file | BackboneMover.hh |
| | Declarations and simple accessor/mutator definitions for SmallMover and ShearMover.
|
| |
| file | BackboneMoverCreator.hh |
| | This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
|
| |
| file | BBConRotMover.cc |
| |
| file | BBConRotMover.fwd.hh |
| |
| file | BBConRotMover.hh |
| |
| file | BBDihedralSamplerMover.cc |
| |
| file | BBDihedralSamplerMover.fwd.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBDihedralSamplerMover.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBDihedralSamplerMoverCreator.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBGaussianMover.cc |
| |
| file | BBGaussianMover.fwd.hh |
| | Gaussian Perturbation to backbone.
|
| |
| file | BBGaussianMover.hh |
| |
| file | BBGaussianMoverCreator.hh |
| |
| file | ChainSplitMover.cc |
| |
| file | ChainSplitMover.fwd.hh |
| | Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
|
| |
| file | ChainSplitMover.hh |
| | Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
|
| |
| file | ChangeAndResetFoldTreeMover.cc |
| |
| file | ChangeAndResetFoldTreeMover.fwd.hh |
| |
| file | ChangeAndResetFoldTreeMover.hh |
| | Basic Mover used for setting up atomic protocols.
|
| |
| file | ChangeAndResetFoldTreeMoverCreator.hh |
| |
| file | ClearConstraintsMover.cc |
| | Remove constraints from the current pose conformation.
|
| |
| file | ClearConstraintsMover.hh |
| | Add constraints to the current pose conformation.
|
| |
| file | ClearConstraintsMoverCreator.hh |
| |
| file | CombinePoseMover.cc |
| |
| file | CombinePoseMover.fwd.hh |
| |
| file | CombinePoseMover.hh |
| |
| file | ConsensusDesignMover.cc |
| | cc file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMover.fwd.hh |
| | fwd.hh file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMover.hh |
| | header file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMoverCreator.hh |
| |
| file | ConstrainToIdealMover.cc |
| | Adds to your pose constraints suitable for idealization of bond lengths and angles.
|
| |
| file | ConstrainToIdealMover.fwd.hh |
| | ConstrainToIdealMover forward declarations header.
|
| |
| file | ConstrainToIdealMover.hh |
| | Adds to your pose constraints suitable for idealization of bond lengths and angles.
|
| |
| file | ConstraintSetMover.cc |
| | Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
|
| |
| file | ConstraintSetMover.fwd.hh |
| |
| file | ConstraintSetMover.hh |
| | Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
|
| |
| file | ConstraintSetMoverCreator.hh |
| |
| file | ContingentAcceptMover.cc |
| |
| file | ContingentAcceptMover.fwd.hh |
| | switch the chain order
|
| |
| file | ContingentAcceptMover.hh |
| | switch the chain order
|
| |
| file | ContingentAcceptMoverCreator.hh |
| |
| file | ConvertRealToVirtualMover.cc |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMover.fwd.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMover.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMoverCreator.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertVirtualToRealMover.cc |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMover.fwd.hh |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMover.hh |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMoverCreator.hh |
| |
| file | CopyDofMover.cc |
| |
| file | CopyDofMover.fwd.hh |
| |
| file | CopyDofMover.hh |
| |
| file | CopyRotamerMover.cc |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMover.fwd.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMover.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMoverCreator.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CoupledMover.cc |
| | implementation of CoupledMover class and functions
|
| |
| file | CoupledMover.fwd.hh |
| |
| file | CoupledMover.hh |
| | definition of CoupledMover class and functions
|
| |
| file | CoupledMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory.
|
| |
| file | CreateSequenceMotifMover.cc |
| | Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif.
|
| |
| file | CreateSequenceMotifMover.fwd.hh |
| | Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif.
|
| |
| file | CreateSequenceMotifMover.hh |
| | Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif.
|
| |
| file | CreateSequenceMotifMoverCreator.hh |
| | Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif.
|
| |
| file | CstInfoMover.cc |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMover.fwd.hh |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMover.hh |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMoverCreator.hh |
| | A Mover to output information about constraints.
|
| |
| file | CutChainMover.cc |
| |
| file | CutChainMover.fwd.hh |
| |
| file | CutChainMover.hh |
| |
| file | CutChainMoverCreator.hh |
| |
| file | CyclizationMover.cc |
| |
| file | CyclizationMover.fwd.hh |
| |
| file | CyclizationMover.hh |
| | Implimentation file for CyclizationMover.
|
| |
| file | ddG.cc |
| | implementation of the ddG class for computing interface delta dGs
|
| |
| file | ddG.fwd.hh |
| | Forward declarations for ddG.
|
| |
| file | ddG.hh |
| |
| file | ddGCreator.hh |
| |
| file | DeleteChainMover.cc |
| |
| file | DeleteChainMover.fwd.hh |
| | Add chain to an existing pose (as a new chain)
|
| |
| file | DeleteChainMover.hh |
| | Delete the chain specified by chain number.
|
| |
| file | DeleteChainMoverCreator.hh |
| |
| file | DeleteChainsMover.cc |
| |
| file | DeleteChainsMover.fwd.hh |
| | Forward declations for DeleteChainsMover.
|
| |
| file | DeleteChainsMover.hh |
| | Delete a chain from a pose.
|
| |
| file | DeleteChainsMoverCreator.hh |
| | Declaration of the protocols::moves::MoverCreator class for the DeleteChainsMover.
|
| |
| file | DesignRepackMover.cc |
| |
| file | DesignRepackMover.fwd.hh |
| | Forward declations for DesignRepackMover.
|
| |
| file | DesignRepackMover.hh |
| |
| file | DisulfideInsertionMover.cc |
| | a mover that closes a receptor bound peptide by an added disulfide bond
|
| |
| file | DisulfideInsertionMover.fwd.hh |
| | Forward header file for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMover.hh |
| | Header file for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.cc |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.fwd.hh |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.hh |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DME_FilterMover.cc |
| |
| file | DME_FilterMover.hh |
| |
| file | DOFHistogramRecorder.cc |
| |
| file | DOFHistogramRecorder.fwd.hh |
| | Forward declarations for class DOFHistogramRecorder.
|
| |
| file | DOFHistogramRecorder.hh |
| |
| file | DumpPdb.cc |
| |
| file | DumpPdb.fwd.hh |
| | Forward header file for DumpPdb.
|
| |
| file | DumpPdb.hh |
| |
| file | DumpPdbCreator.hh |
| |
| file | DumpSingleResidueRotamers.cc |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamers.fwd.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamers.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamersCreator.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | FavorSequenceProfile.cc |
| | Add a SequenceProfileConstraint to a pose.
|
| |
| file | FavorSequenceProfile.hh |
| | Add a SequenceProfileConstraint to a pose.
|
| |
| file | FavorSequenceProfileCreator.hh |
| | Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
|
| |
| file | FavorSymmetricSequence.cc |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequence.fwd.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequence.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequenceCreator.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FindConsensusSequence.cc |
| | Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequence.fwd.hh |
| | Finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequence.hh |
| | Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequenceCreator.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | ForceDisulfidesMover.cc |
| |
| file | ForceDisulfidesMover.fwd.hh |
| | ForceDisulfidesMover forward declarations header.
|
| |
| file | ForceDisulfidesMover.hh |
| |
| file | ForceDisulfidesMoverCreator.hh |
| |
| file | FragmentMover.cc |
| |
| file | FragmentMover.fwd.hh |
| |
| file | FragmentMover.hh |
| |
| file | GenericMonteCarloMover.cc |
| |
| file | GenericMonteCarloMover.fwd.hh |
| |
| file | GenericMonteCarloMover.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | GenericMonteCarloMoverCreator.hh |
| |
| file | GenericSimulatedAnnealer.cc |
| | perform a given mover and sample structures by MonteCarlo with gradual simulated annealing
|
| |
| file | GenericSimulatedAnnealer.fwd.hh |
| |
| file | GenericSimulatedAnnealer.hh |
| | perform a given mover and sample structures by MonteCarlo with simulated annealing of acceptance temperatures
|
| |
| file | GenericSimulatedAnnealerCreator.hh |
| | This class will create instances of Mover GenericSimulatedAnnealer for the MoverFactory.
|
| |
| file | GunnCost.cc |
| |
| file | GunnCost.hh |
| |
| file | LoadPDBMover.cc |
| | simple mover that loads a pdb from file and replaces the current pdb with it. Useful for checkpointing
|
| |
| file | LoadPDBMover.fwd.hh |
| | switch the chain order
|
| |
| file | LoadPDBMover.hh |
| | switch the chain order
|
| |
| file | LoadPDBMoverCreator.hh |
| |
| file | LoadUnboundRotMover.cc |
| | LoadUnboundRotMover methods implemented.
|
| |
| file | LoadUnboundRotMover.fwd.hh |
| |
| file | LoadUnboundRotMover.hh |
| |
| file | LoadUnboundRotMoverCreator.hh |
| |
| file | MakeJunctionsMover.cc |
| | Reads in a file that contains a descriptions of the junctions. Then goes through that file making 1 junction at a time.
|
| |
| file | MakeJunctionsMover.fwd.hh |
| |
| file | MakeJunctionsMover.hh |
| |
| file | MakeJunctionsMoverCreator.hh |
| |
| file | MembraneTopology.cc |
| |
| file | MembraneTopology.fwd.hh |
| |
| file | MembraneTopology.hh |
| |
| file | MembraneTopologyCreator.hh |
| |
| file | MergePDBatOverlapMover.cc |
| | This class combines two pdbs with a known overlap.
|
| |
| file | MergePDBatOverlapMover.fwd.hh |
| |
| file | MergePDBatOverlapMover.hh |
| | This class combines two pdbs with a known overlap.
|
| |
| file | MergePDBatOverlapMoverCreator.hh |
| | This class combines two pdbs with a known overlap.
|
| |
| file | MergePDBMover.cc |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MergePDBMover.fwd.hh |
| |
| file | MergePDBMover.hh |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MergePDBMoverCreator.hh |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MissingDensityToJumpMover.cc |
| | Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
|
| |
| file | MissingDensityToJumpMover.fwd.hh |
| | Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
|
| |
| file | MissingDensityToJumpMover.hh |
| |
| file | ModifyVariantTypeMover.cc |
| | Modify variant type to residues.
|
| |
| file | ModifyVariantTypeMover.fwd.hh |
| |
| file | ModifyVariantTypeMover.hh |
| |
| file | ModifyVariantTypeMoverCreator.hh |
| |
| file | MonteCarloInterface.cc |
| | A MonteCarlo object for optimizing the interface dG as defined using InterfaceAnalyzer. The dG and Total energy can be weighted. This is so that the interface energy itself can be optimized through a protocol.
|
| |
| file | MonteCarloInterface.fwd.hh |
| | A MonteCarlo object for optimizing the interface dG as defined using InterfaceAnalyzer. The dG and Total energy can be weighted. This is so that the interface energy itself can be optimized through a protocol.
|
| |
| file | MonteCarloInterface.hh |
| | A MonteCarlo object for optimizing the interface dG as defined using InterfaceAnalyzer. The dG and Total energy can be weighted. This is so that the interface energy itself can be optimized through a protocol.
|
| |
| file | MonteCarloRecover.cc |
| |
| file | MonteCarloRecover.fwd.hh |
| |
| file | MonteCarloRecover.hh |
| |
| file | MonteCarloRecoverCreator.hh |
| |
| file | MonteCarloReset.cc |
| |
| file | MonteCarloReset.fwd.hh |
| |
| file | MonteCarloReset.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | MonteCarloResetCreator.hh |
| |
| file | MonteCarloTest.cc |
| |
| file | MonteCarloTest.fwd.hh |
| |
| file | MonteCarloTest.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | MonteCarloTestCreator.hh |
| |
| file | MSDMover.cc |
| | Multistate design mover used for restrained multistate design.
|
| |
| file | MSDMover.fwd.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | MSDMover.hh |
| | Multistate design mover used for restrained multistate design.
|
| |
| file | MSDMoverCreator.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | MutateResidue.cc |
| |
| file | MutateResidue.fwd.hh |
| |
| file | MutateResidue.hh |
| |
| file | MutateResidueCreator.hh |
| |
| file | PackPwatRotamersMover.cc |
| |
| file | PackPwatRotamersMover.fwd.hh |
| |
| file | PackPwatRotamersMover.hh |
| |
| file | PackPwatRotamersMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover PackPwatRotamersMover for the protocols::moves::MoverFactory.
|
| |
| file | PDBReloadMover.cc |
| |
| file | PDBReloadMover.fwd.hh |
| | PDBReloadMover forward declarations header.
|
| |
| file | PDBReloadMover.hh |
| |
| file | PDBReloadMoverCreator.hh |
| |
| file | PeriodicBoxMover.cc |
| | Mover for running liquid simulation (or related other)
|
| |
| file | PeriodicBoxMover.fwd.hh |
| |
| file | PeriodicBoxMover.hh |
| | Mover for running liquid simulation (and related others)
|
| |
| file | PeriodicBoxMoverCreator.hh |
| |
| file | PoseFromPoseResourceMover.cc |
| | Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
|
| |
| file | PoseFromPoseResourceMover.fwd.hh |
| | Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
|
| |
| file | PoseFromPoseResourceMover.hh |
| | Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
|
| |
| file | PoseFromPoseResourceMoverCreator.hh |
| | Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
|
| |
| file | ProlineFixMover.cc |
| |
| file | ProlineFixMover.fwd.hh |
| |
| file | ProlineFixMover.hh |
| |
| file | PSSM2BfactorMover.cc |
| |
| file | PSSM2BfactorMover.fwd.hh |
| | switch the chain order
|
| |
| file | PSSM2BfactorMover.hh |
| |
| file | PSSM2BfactorMoverCreator.hh |
| |
| file | RandomOmegaFlipMover.cc |
| |
| file | RandomOmegaFlipMover.fwd.hh |
| |
| file | RandomOmegaFlipMover.hh |
| |
| file | RandomOmegaFlipMoverCreator.hh |
| | This class will create instances of RandomOmegaFlipMover for the MoverFactory.
|
| |
| file | RandomTorsionMover.cc |
| |
| file | RandomTorsionMover.fwd.hh |
| |
| file | RandomTorsionMover.hh |
| |
| file | RandomTorsionMoverCreator.hh |
| | This class will create instances of RandomTorsionMover for the MoverFactory.
|
| |
| file | RepeatPropagationMover.cc |
| | Can repeat both a symmetric, non symmetric & broken pose.
|
| |
| file | RepeatPropagationMover.fwd.hh |
| |
| file | RepeatPropagationMover.hh |
| |
| file | RepeatPropagationMoverCreator.hh |
| |
| file | ReportEffectivePKA.cc |
| |
| file | ReportEffectivePKA.hh |
| |
| file | ReportEffectivePKACreator.hh |
| | This class will create instances of Mover ReportEffectivePKA for the MoverFactory.
|
| |
| file | ReportXYZ.cc |
| |
| file | ReportXYZ.fwd.hh |
| |
| file | ReportXYZ.hh |
| | adds the x,y,z of a selected residue to the score function
|
| |
| file | ReportXYZCreator.hh |
| |
| file | RepulsiveOnlyMover.cc |
| | calculate repulsive energy only for certain residues
|
| |
| file | RepulsiveOnlyMover.fwd.hh |
| |
| file | RepulsiveOnlyMover.hh |
| |
| file | ResetBaselineMover.cc |
| |
| file | ResetBaselineMover.fwd.hh |
| | switch the chain order
|
| |
| file | ResetBaselineMover.hh |
| | switch the chain order
|
| |
| file | ResetBaselineMoverCreator.hh |
| |
| file | ResetFoldTree.cc |
| |
| file | ResetFoldTree.fwd.hh |
| | eliminates the fold tree
|
| |
| file | ResetFoldTree.hh |
| | wipes out a fold tree making the first residue 0 and the last residue the length of the protein
|
| |
| file | ResetFoldTreeCreator.hh |
| |
| file | ResidueTypeConstraintMover.cc |
| | Assigns a ResidueTypeConstraint to a pose.
|
| |
| file | ResidueTypeConstraintMover.fwd.hh |
| |
| file | ResidueTypeConstraintMover.hh |
| | Assigns a ResidueTypeConstraint to a pose.
|
| |
| file | ResidueTypeConstraintMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover ResidueTypeConstraintMover for the protocols::moves::MoverFactory.
|
| |
| file | ResTypeFragmentMover.cc |
| |
| file | ResTypeFragmentMover.fwd.hh |
| |
| file | ResTypeFragmentMover.hh |
| |
| file | ReturnSidechainMover.cc |
| | ReturnSidechainMover methods implemented.
|
| |
| file | ReturnSidechainMover.fwd.hh |
| | ReturnSidechainMover forward declarations header.
|
| |
| file | ReturnSidechainMover.hh |
| | protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
|
| |
| file | RingConformationMover.cc |
| | Method definitions for RingConformationMover.
|
| |
| file | RingConformationMover.fwd.hh |
| | Forward declarations for RingConformationMover.
|
| |
| file | RingConformationMover.hh |
| | Declarations and simple accessor/mutator definitions for RingConformationMover.
|
| |
| file | RingConformationMoverCreator.hh |
| | Method declarations for RingConformationMoverCreator.
|
| |
| |
| |
| |
| |
| file | ScoreMover.cc |
| | Applies a ScoreFunction to a Pose. Also has CASP and loop modeling features.
|
| |
| file | ScoreMover.fwd.hh |
| | ScoreMover forward declarations header.
|
| |
| file | ScoreMover.hh |
| |
| file | ScoreMoverCreator.hh |
| |
| file | SequenceProfileMover.cc |
| | moverization of code that was embedded in the parser
|
| |
| file | SequenceProfileMover.fwd.hh |
| |
| file | SequenceProfileMover.hh |
| | BS mover to get around a stupid "mover" that was embedded in the parser.
|
| |
| file | SequenceProfileMoverCreator.hh |
| |
| file | SetReturningPackRotamersMover.cc |
| | A pack mover which returns not just the best packer solution, but all nloop solutions.
|
| |
| file | SetReturningPackRotamersMover.fwd.hh |
| |
| file | SetReturningPackRotamersMover.hh |
| | A PackRotamers mover which returns a set of packed poses for when ndruns/nloop is in use.
|
| |
| file | SetTorsion.cc |
| |
| file | SetTorsion.fwd.hh |
| |
| file | SetTorsion.hh |
| | Sets the value of a desired torsion. Header files for the mover.
|
| |
| file | SetTorsionCreator.hh |
| |
| file | SetupMetalsMover.cc |
| |
| file | SetupMetalsMover.fwd.hh |
| | SetupMetalsMover forward declarations header.
|
| |
| file | SetupMetalsMover.hh |
| | class definition for SetupMetalsMover
|
| |
| file | SetupMetalsMoverCreator.hh |
| |
| file | ShakeStructureMover.cc |
| |
| file | ShakeStructureMover.fwd.hh |
| |
| file | ShakeStructureMover.hh |
| |
| file | ShortBackrubMover.cc |
| | implementation of ShortBackrubMover class and functions
|
| |
| file | ShortBackrubMover.fwd.hh |
| |
| file | ShortBackrubMover.hh |
| | definition of ShortBackrubMover class and functions
|
| |
| file | ShortBackrubMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory.
|
| |
| file | SimpleThreadingMover.cc |
| | Very Simple class for threading a regional sequence onto a structure.
|
| |
| file | SimpleThreadingMover.fwd.hh |
| |
| file | SimpleThreadingMover.hh |
| |
| file | SimpleThreadingMoverCreator.hh |
| |
| file | SmoothFragmentMover.cc |
| |
| file | SmoothFragmentMover.fwd.hh |
| |
| file | SmoothFragmentMover.hh |
| |
| file | StorePoseSnapshot.cc |
| | Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state.
|
| |
| file | StorePoseSnapshot.fwd.hh |
| | Owning pointers and whatnot for the StorePoseSnapshot mover class.
|
| |
| file | StorePoseSnapshot.hh |
| | Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. Header files for the mover.
|
| |
| file | StorePoseSnapshotCreator.hh |
| | This class will create instances of the protocols::simple_moves::StorePoseSnapshot mover for the protocols::moves::MoverFactory.
|
| |
| file | StructProfileMover.cc |
| |
| file | StructProfileMover.fwd.hh |
| | Quickly generates a structure profile.
|
| |
| file | StructProfileMover.hh |
| | Quickly generates a structure profile.
|
| |
| file | StructProfileMoverCreator.hh |
| |
| file | SuperimposeMover.cc |
| |
| file | SuperimposeMover.fwd.hh |
| | SuperimposeMover forward declarations header.
|
| |
| file | SuperimposeMover.hh |
| |
| file | SuperimposeMoverCreator.hh |
| |
| file | SwitchChainOrderMover.cc |
| |
| file | SwitchChainOrderMover.fwd.hh |
| | switch the chain order
|
| |
| file | SwitchChainOrderMover.hh |
| | switch the chain order
|
| |
| file | SwitchChainOrderMoverCreator.hh |
| |
| file | SwitchResidueTypeSetMover.cc |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMover.fwd.hh |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMover.hh |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMoverCreator.hh |
| |
| file | SymmetricFragmentMover.cc |
| |
| file | SymmetricFragmentMover.fwd.hh |
| |
| file | SymmetricFragmentMover.hh |
| |
| file | TailsScoreMover.cc |
| |
| file | TailsScoreMover.hh |
| |
| file | TorsionDOFMover.cc |
| | TorsionDOFMover methods implemented.
|
| |
| file | TorsionDOFMover.fwd.hh |
| | TorsionDOFMover forward declarations header.
|
| |
| file | TorsionDOFMover.hh |
| | TorsionDOFMover header.
|
| |
| file | TorsionSetMover.cc |
| |
| file | TorsionSetMover.fwd.hh |
| |
| file | TorsionSetMover.hh |
| |
| file | Tumble.cc |
| | Add constraints to the current pose conformation.
|
| |
| file | Tumble.hh |
| | Declaration of the MoverCreator class for the Tumble.
|
| |
| file | TumbleCreator.hh |
| |
| file | UniformPositionMover.cc |
| |
| file | UniformPositionMover.fwd.hh |
| | Apply a uniform (deterministic move) to a given position.
|
| |
| file | UniformPositionMover.hh |
| | Apply a uniform (deterministic move) to a given position.
|
| |
| file | VirtualRootMover.cc |
| | Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable.
|
| |
| file | VirtualRootMover.fwd.hh |
| | VirtualRootMover forward declarations header.
|
| |
| file | VirtualRootMover.hh |
| | Manipulate virtual roots on poses.
|
| |
| file | VirtualRootMoverCreator.hh |
| |
| file | WaterBoxMover.cc |
| |
| file | WaterBoxMover.fwd.hh |
| |
| file | WaterBoxMover.hh |
| |
| file | WaterBoxMoverCreator.hh |
| |
| file | WobbleMover.cc |
| |
| file | WobbleMover.hh |
| |
| file | WriteFiltersToPose.cc |
| | Writes all filter results to the pose file.
|
| |
| file | WriteFiltersToPose.fwd.hh |
| |
| file | WriteFiltersToPose.hh |
| | Writes all filter results to the pose file.
|
| |
| file | WriteFiltersToPoseCreator.hh |
| | This class will create instances of Mover WriteFiltersToPose for the MoverFactory.
|
| |
| file | WriteSSEMover.cc |
| | Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
|
| |
| file | WriteSSEMover.fwd.hh |
| | Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
|
| |
| file | WriteSSEMover.hh |
| | Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
|
| |
| file | WriteSSEMoverCreator.hh |
| | Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
|
| |
1.8.7