phosphoArg_minimize.cc File Reference

#include <iostream>
#include <iomanip>
#include <devel/init.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/util.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <basic/options/option_macros.hh>
#include <core/scoring/Energies.hh>
#include <protocols/moves/RigidBodyMover.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <numeric/xyzVector.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.phosphoArg_minimize.main")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, pyrosetta.io::create_score_function, do_minimization(), basic::init(), NEW_OPT, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), oop_conformations::scorefxn, basic::options::start_file(), TR, and pna::trans_mover.

Variable Documentation

TR

basic::Tracer TR("apps.pilot.phosphoArg_minimize.main") ( "apps.pilot.phosphoArg_minimize.main"  )

static

Referenced by main().