templates Namespace Reference

Namespaces
	cst
	fragsteal

Functions
BooleanOptionKey const	templates ("templates")
FileOptionKey const	config ("templates:config")
BooleanOptionKey const	fix_aligned_residues ("templates:fix_aligned_residues")
FileOptionKey const	fix_frag_file ("templates:fix_frag_file")
IntegerOptionKey const	fix_margin ("templates:fix_margin")
IntegerOptionKey const	min_nr_large_frags ("templates:min_nr_large_frags")
IntegerOptionKey const	min_nr_small_frags ("templates:min_nr_small_frags")
BooleanOptionKey const	no_pick_fragments ("templates:no_pick_fragments")
IntegerOptionKey const	nr_large_copies ("templates:nr_large_copies")
IntegerOptionKey const	nr_small_copies ("templates:nr_small_copies")
BooleanOptionKey const	pairings ("templates:pairings")
BooleanOptionKey const	pick_multiple_sizes ("templates:pick_multiple_sizes")
BooleanOptionKey const	strand_constraint ("templates:strand_constraint")
BooleanOptionKey const	vary_frag_size ("templates:vary_frag_size")
BooleanOptionKey const	no_culling ("templates:no_culling")
FileOptionKey const	helix_pairings ("templates:helix_pairings")
FileOptionKey const	prefix ("templates:prefix")
IntegerOptionKey const	change_movemap ("templates:change_movemap")
BooleanOptionKey const	force_native_topology ("templates:force_native_topology")
RealOptionKey const	topology_rank_cutoff ("templates:topology_rank_cutoff")
IntegerOptionKey const	min_frag_size ("templates:min_frag_size")
IntegerOptionKey const	max_shrink ("templates:max_shrink")
IntegerOptionKey const	shrink_step ("templates:shrink_step")
IntegerOptionKey const	shrink_pos_step ("templates:shrink_pos_step")
IntegerOptionKey const	min_padding ("templates:min_padding")
IntegerOptionKey const	min_align_pos ("templates:min_align_pos")
IntegerOptionKey const	max_align_pos ("templates:max_align_pos")

Function Documentation

change_movemap()

IntegerOptionKey const templates::change_movemap

(

"templates:change_movemap"

)

config()

FileOptionKey const templates::config

(

"templates:config"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_templates().

fix_aligned_residues()

BooleanOptionKey const templates::fix_aligned_residues

(

"templates:fix_aligned_residues"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options().

fix_frag_file()

FileOptionKey const templates::fix_frag_file

(

"templates:fix_frag_file"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::insert_template_frags(), and protocols::abinitio::JumpSpecificAbrelax::register_options().

fix_margin()

IntegerOptionKey const templates::fix_margin

(

"templates:fix_margin"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options().

force_native_topology()

BooleanOptionKey const templates::force_native_topology

(

"templates:force_native_topology"

)

helix_pairings()

FileOptionKey const templates::helix_pairings

(

"templates:helix_pairings"

)

max_align_pos()

IntegerOptionKey const templates::max_align_pos

(

"templates:max_align_pos"

)

max_shrink()

IntegerOptionKey const templates::max_shrink

(

"templates:max_shrink"

)

min_align_pos()

IntegerOptionKey const templates::min_align_pos

(

"templates:min_align_pos"

)

min_frag_size()

IntegerOptionKey const templates::min_frag_size

(

"templates:min_frag_size"

)

min_nr_large_frags()

IntegerOptionKey const templates::min_nr_large_frags

(

"templates:min_nr_large_frags"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

min_nr_small_frags()

IntegerOptionKey const templates::min_nr_small_frags

(

"templates:min_nr_small_frags"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

min_padding()

IntegerOptionKey const templates::min_padding

(

"templates:min_padding"

)

no_culling()

BooleanOptionKey const templates::no_culling

(

"templates:no_culling"

)

no_pick_fragments()

BooleanOptionKey const templates::no_pick_fragments

(

"templates:no_pick_fragments"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

nr_large_copies()

IntegerOptionKey const templates::nr_large_copies

(

"templates:nr_large_copies"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

nr_small_copies()

IntegerOptionKey const templates::nr_small_copies

(

"templates:nr_small_copies"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

pairings()

BooleanOptionKey const templates::pairings

(

"templates:pairings"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), protocols::abinitio::JumpSpecificAbrelax::setup_jumps(), and protocols::abinitio::JumpSpecificAbrelax::setup_templates().

pick_multiple_sizes()

BooleanOptionKey const templates::pick_multiple_sizes

(

"templates:pick_multiple_sizes"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().

prefix()

FileOptionKey const templates::prefix

(

"templates:prefix"

)

shrink_pos_step()

IntegerOptionKey const templates::shrink_pos_step

(

"templates:shrink_pos_step"

)

shrink_step()

IntegerOptionKey const templates::shrink_step

(

"templates:shrink_step"

)

strand_constraint()

BooleanOptionKey const templates::strand_constraint

(

"templates:strand_constraint"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::add_constraints(), and protocols::abinitio::JumpSpecificAbrelax::register_options().

templates()

BooleanOptionKey const templates::templates

(

"templates"

)

topology_rank_cutoff()

RealOptionKey const templates::topology_rank_cutoff

(

"templates:topology_rank_cutoff"

)

vary_frag_size()

BooleanOptionKey const templates::vary_frag_size

(

"templates:vary_frag_size"

)

Referenced by protocols::abinitio::JumpSpecificAbrelax::register_options(), and protocols::abinitio::JumpSpecificAbrelax::setup_fragments().