test.T500_Packing Namespace Reference

Functions
def	elim_everything_except_G (pose, sfxn, task, graph, rotamer_sets)

Variables
	extra_options
	pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")
	scorefxn = get_fa_scorefxn()
	task_pack = standard_packer_task(pose)
	pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )
	rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)
	task_design = core.pack.task.TaskFactory.create_packer_task(pose)
	tf = standard_task_factory()
	pr = core.pack.task.operation.PreventRepacking()
	elimer = core.pack.rotamer_set.PyRotamerEliminator()
	elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()
	pr2 = protocols.minimization_packing.PackRotamersMover()
	op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_t()
	pose2 = pose_from_sequence( "FRED" )

Function Documentation

elim_everything_except_G()

def test.T500_Packing.elim_everything_except_G	(		pose,
			sfxn,
			task,
			graph,
			rotamer_sets
	)

References range.

Variable Documentation

elimer

test.T500_Packing.elimer = core.pack.rotamer_set.PyRotamerEliminator()

elimerTO

test.T500_Packing.elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()

extra_options

test.T500_Packing.extra_options

op_list

test.T500_Packing.op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_t()

pack

test.T500_Packing.pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )

pose

test.T500_Packing.pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")

pose2

test.T500_Packing.pose2 = pose_from_sequence( "FRED" )

pr

test.T500_Packing.pr = core.pack.task.operation.PreventRepacking()

pr2

test.T500_Packing.pr2 = protocols.minimization_packing.PackRotamersMover()

Referenced by TCDock.dump_pdb().

rotamer_trials

test.T500_Packing.rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)

Referenced by build_helix_test(), dinucleotide_test(), dna_coupled_rotamer_design_test(), main(), motif_scan(), my_main(), not1_test(), pack_phosphates(), pack_sidechains(), rebuild_test(), repack_cluster(), repack_step(), rna_design_test(), rotamer_trials_test(), rotamerize_rna_test(), and simple_dna_test().

scorefxn

test.T500_Packing.scorefxn = get_fa_scorefxn()

task_design

test.T500_Packing.task_design = core.pack.task.TaskFactory.create_packer_task(pose)

Referenced by rna_design_gap_test().

task_pack

test.T500_Packing.task_pack = standard_packer_task(pose)

tf

test.T500_Packing.tf = standard_task_factory()