pyrosetta.toolbox.extract_coords_pose Namespace Reference

Functions
def	pose_coords_as_rows (pack_or_pose, selection=list(), atom_names=list())
def	pose_coords_as_cols (pack_or_pose, selection=list(), atom_names=list())

Function Documentation

pose_coords_as_cols()

def pyrosetta.toolbox.extract_coords_pose.pose_coords_as_cols	(		pack_or_pose,
			selection = list(),
			atom_names = list()
	)

Construct an ndarray of x, y, and z coordinates from all residues in selection
    and atom names in <atom_names> from <pose> as columns and return it.

Args:
    pack_or_pose (pyrosetta.rosetta.core.pose.Pose OR pyrosetta.distributed.packed_pose.PackedPose):
        the `Pose` instance from which coordinates will be extracted.
    selection (list): a list of residue numbers to use. Defaults to all residues.
    atom_names (list): a list of atom names to include. Defaults to all atoms.

Returns:
    numpy.ndarray: a 3xN array of coordinates.

References basic::options::OptionKeys::in::file.list.

pose_coords_as_rows()

def pyrosetta.toolbox.extract_coords_pose.pose_coords_as_rows	(		pack_or_pose,
			selection = list(),
			atom_names = list()
	)

Construct an ndarray of x, y, and z coordinates from all residues in selection
    and atom names in <atom_names> from <pose> as rows and return it.

Args:
    pack_or_pose (pyrosetta.rosetta.core.pose.Pose OR pyrosetta.distributed.packed_pose.PackedPose):
        the `Pose` instance from which coordinates will be extracted.
    selection (list): a list of residue numbers to use. Defaults to all residues.
    atom_names (list): a list of atom names to include. Defaults to all atoms.

Returns:
    numpy.ndarray: an Nx3 array of coordinates.

References basic::options::OptionKeys::in::file.list, range, and ObjexxFCL.strip().