|
Rosetta
|
Functions | |
| StringOptionKey const | sasa::implicit_hydrogen_radii_set ("sasa:implicit_hydrogen_radii_set") |
| StringOptionKey const | sasa::explicit_hydrogen_radii_set ("sasa:explicit_hydrogen_radii_set") |
| BooleanOptionKey const | symmetry::symmetry ("symmetry") |
| StringOptionKey const | symmetry::symmetry_definition ("symmetry:symmetry_definition") |
| RealOptionKey const | symmetry::reweight_symm_interactions ("symmetry:reweight_symm_interactions") |
| BooleanOptionKey const | symmetry::initialize_rigid_body_dofs ("symmetry:initialize_rigid_body_dofs") |
| BooleanOptionKey const | symmetry::detect_bonds ("symmetry:detect_bonds") |
| RealVectorOptionKey const | symmetry::perturb_rigid_body_dofs ("symmetry:perturb_rigid_body_dofs") |
| BooleanOptionKey const | symmetry::symmetric_rmsd ("symmetry:symmetric_rmsd") |
| BooleanOptionKey const | abinitio::abinitio ("abinitio") |
| BooleanOptionKey const | abinitio::membrane ("abinitio:membrane") |
| BooleanOptionKey const | abinitio::use_loophash_filter ("abinitio:use_loophash_filter") |
| RealOptionKey const | abinitio::loophash_filter_acceptance_rate ("abinitio:loophash_filter_acceptance_rate") |
| FileOptionKey const | abinitio::kill_hairpins ("abinitio:kill_hairpins") |
| RealOptionKey const | abinitio::kill_hairpins_frequency ("abinitio:kill_hairpins_frequency") |
| BooleanOptionKey const | abinitio::smooth_cycles_only ("abinitio:smooth_cycles_only") |
| BooleanOptionKey const | abinitio::relax ("abinitio:relax") |
| BooleanOptionKey const | abinitio::final_clean_relax ("abinitio:final_clean_relax") |
| BooleanOptionKey const | abinitio::fastrelax ("abinitio:fastrelax") |
| BooleanOptionKey const | abinitio::multifastrelax ("abinitio:multifastrelax") |
| BooleanOptionKey const | abinitio::debug ("abinitio:debug") |
| BooleanOptionKey const | abinitio::clear_pose_cache ("abinitio:clear_pose_cache") |
| BooleanOptionKey const | abinitio::explicit_pdb_debug ("abinitio:explicit_pdb_debug") |
| BooleanOptionKey const | abinitio::use_filters ("abinitio:use_filters") |
| BooleanOptionKey const | abinitio::use_trRosetta_constraints ("abinitio:use_trRosetta_constraints") |
| RealOptionKey const | abinitio::increase_cycles ("abinitio:increase_cycles") |
| IntegerOptionKey const | abinitio::number_3mer_frags ("abinitio:number_3mer_frags") |
| IntegerOptionKey const | abinitio::number_9mer_frags ("abinitio:number_9mer_frags") |
| RealOptionKey const | abinitio::temperature ("abinitio:temperature") |
| RealOptionKey const | abinitio::rg_reweight ("abinitio:rg_reweight") |
| RealOptionKey const | abinitio::rsd_wt_helix ("abinitio:rsd_wt_helix") |
| RealOptionKey const | abinitio::rsd_wt_strand ("abinitio:rsd_wt_strand") |
| RealOptionKey const | abinitio::rsd_wt_loop ("abinitio:rsd_wt_loop") |
| BooleanOptionKey const | abinitio::skip_convergence_check ("abinitio:skip_convergence_check") |
| FileVectorOptionKey const | abinitio::stage1_patch ("abinitio:stage1_patch") |
| FileVectorOptionKey const | abinitio::stage2_patch ("abinitio:stage2_patch") |
| FileVectorOptionKey const | abinitio::stage3a_patch ("abinitio:stage3a_patch") |
| FileVectorOptionKey const | abinitio::stage3b_patch ("abinitio:stage3b_patch") |
| FileVectorOptionKey const | abinitio::stage4_patch ("abinitio:stage4_patch") |
| FileVectorOptionKey const | abinitio::stage5_patch ("abinitio:stage5_patch") |
| BooleanOptionKey const | abinitio::steal_3mers ("abinitio:steal_3mers") |
| BooleanOptionKey const | abinitio::steal_9mers ("abinitio:steal_9mers") |
| BooleanOptionKey const | abinitio::no_write_failures ("abinitio:no_write_failures") |
| BooleanOptionKey const | abinitio::relax_failures ("abinitio:relax_failures") |
| BooleanOptionKey const | abinitio::relax_with_jumps ("abinitio:relax_with_jumps") |
| BooleanOptionKey const | abinitio::process_store ("abinitio:process_store") |
| IntegerVectorOptionKey const | abinitio::fix_residues_to_native ("abinitio:fix_residues_to_native") |
| BooleanOptionKey const | abinitio::return_full_atom ("abinitio:return_full_atom") |
| BooleanOptionKey const | abinitio::detect_disulfide_before_relax ("abinitio:detect_disulfide_before_relax") |
| BooleanOptionKey const | abinitio::close_loops ("abinitio:close_loops") |
| BooleanOptionKey const | abinitio::bGDT ("abinitio:bGDT") |
| BooleanOptionKey const | abinitio::dump_frags ("abinitio:dump_frags") |
| BooleanOptionKey const | abinitio::jdist_rerun ("abinitio:jdist_rerun") |
| RealOptionKey const | abinitio::perturb ("abinitio:perturb") |
| BooleanOptionKey const | abinitio::rerun ("abinitio:rerun") |
| IntegerVectorOptionKey const | abinitio::rmsd_residues ("abinitio:rmsd_residues") |
| BooleanOptionKey const | abinitio::start_native ("abinitio:start_native") |
| BooleanOptionKey const | abinitio::cyclic_peptide ("abinitio:cyclic_peptide") |
| BooleanOptionKey const | abinitio::debug_structures ("abinitio:debug_structures") |
| FileOptionKey const | abinitio::log_frags ("abinitio:log_frags") |
| BooleanOptionKey const | abinitio::only_stage1 ("abinitio:only_stage1") |
| RealOptionKey const | abinitio::end_bias ("abinitio:end_bias") |
| BooleanOptionKey const | abinitio::apply_end_bias ("abinitio:apply_end_bias") |
| IntegerOptionKey const | abinitio::symmetry_residue ("abinitio:symmetry_residue") |
| RealOptionKey const | abinitio::vdw_weight_stage1 ("abinitio:vdw_weight_stage1") |
| BooleanOptionKey const | abinitio::override_vdw_all_stages ("abinitio:override_vdw_all_stages") |
| IntegerVectorOptionKey const | abinitio::recover_low_in_stages ("abinitio:recover_low_in_stages") |
| IntegerVectorOptionKey const | abinitio::skip_stages ("abinitio:skip_stages") |
| BooleanOptionKey const | abinitio::close_chbrk ("abinitio:close_chbrk") |
| BooleanOptionKey const | abinitio::include_stage5 ("abinitio:include_stage5") |
| BooleanOptionKey const | abinitio::close_loops_by_idealizing ("abinitio:close_loops_by_idealizing") |
| BooleanOptionKey const | abinitio::optimize_cutpoints_using_kic ("abinitio:optimize_cutpoints_using_kic") |
| IntegerOptionKey const | abinitio::optimize_cutpoints_margin ("abinitio:optimize_cutpoints_margin") |
| BooleanOptionKey const | abinitio::star::star ("abinitio:star") |
| RealOptionKey const | abinitio::star::initial_dist_cutoff ("abinitio:star:initial_dist_cutoff") |
| IntegerOptionKey const | abinitio::star::min_unaligned_len ("abinitio:star:min_unaligned_len") |
| BooleanOptionKey const | abrelax::abrelax ("abrelax") |
| BooleanOptionKey const | abrelax::fail_unclosed ("abrelax:fail_unclosed") |
| BooleanOptionKey const | AnchoredDesign::AnchoredDesign ("AnchoredDesign") |
| FileOptionKey const | AnchoredDesign::anchor ("AnchoredDesign:anchor") |
| BooleanOptionKey const | AnchoredDesign::allow_anchor_repack ("AnchoredDesign:allow_anchor_repack") |
| BooleanOptionKey const | AnchoredDesign::vary_cutpoints ("AnchoredDesign:vary_cutpoints") |
| BooleanOptionKey const | AnchoredDesign::no_frags ("AnchoredDesign:no_frags") |
| BooleanOptionKey const | AnchoredDesign::debug ("AnchoredDesign:debug") |
| BooleanOptionKey const | AnchoredDesign::show_extended ("AnchoredDesign:show_extended") |
| BooleanOptionKey const | AnchoredDesign::refine_only ("AnchoredDesign:refine_only") |
| BooleanOptionKey const | AnchoredDesign::perturb_show ("AnchoredDesign:perturb_show") |
| IntegerOptionKey const | AnchoredDesign::perturb_cycles ("AnchoredDesign:perturb_cycles") |
| RealOptionKey const | AnchoredDesign::perturb_temp ("AnchoredDesign:perturb_temp") |
| BooleanOptionKey const | AnchoredDesign::perturb_CCD_off ("AnchoredDesign:perturb_CCD_off") |
| BooleanOptionKey const | AnchoredDesign::perturb_KIC_off ("AnchoredDesign:perturb_KIC_off") |
| BooleanOptionKey const | AnchoredDesign::refine_CCD_off ("AnchoredDesign:refine_CCD_off") |
| BooleanOptionKey const | AnchoredDesign::refine_KIC_off ("AnchoredDesign:refine_KIC_off") |
| IntegerOptionKey const | AnchoredDesign::refine_cycles ("AnchoredDesign:refine_cycles") |
| RealOptionKey const | AnchoredDesign::refine_temp ("AnchoredDesign:refine_temp") |
| IntegerOptionKey const | AnchoredDesign::refine_repack_cycles ("AnchoredDesign:refine_repack_cycles") |
| BooleanOptionKey const | AnchoredDesign::rmsd ("AnchoredDesign:rmsd") |
| BooleanOptionKey const | AnchoredDesign::unbound_mode ("AnchoredDesign:unbound_mode") |
| RealOptionKey const | AnchoredDesign::chainbreak_weight ("AnchoredDesign:chainbreak_weight") |
| BooleanOptionKey const | AnchoredDesign::filters::filters ("AnchoredDesign:filters") |
| RealOptionKey const | AnchoredDesign::filters::score ("AnchoredDesign:filters:score") |
| RealOptionKey const | AnchoredDesign::filters::sasa ("AnchoredDesign:filters:sasa") |
| BooleanOptionKey const | AnchoredDesign::filters::omega ("AnchoredDesign:filters:omega") |
| BooleanOptionKey const | AnchoredDesign::akash::akash ("AnchoredDesign:akash") |
| IntegerOptionKey const | AnchoredDesign::akash::dyepos ("AnchoredDesign:akash:dyepos") |
| BooleanOptionKey const | AnchoredDesign::testing::testing ("AnchoredDesign:testing") |
| RealOptionKey const | AnchoredDesign::testing::VDW_weight ("AnchoredDesign:testing:VDW_weight") |
| BooleanOptionKey const | AnchoredDesign::testing::anchor_via_constraints ("AnchoredDesign:testing:anchor_via_constraints") |
| BooleanOptionKey const | AnchoredDesign::testing::delete_interface_native_sidechains ("AnchoredDesign:testing:delete_interface_native_sidechains") |
| FileOptionKey const | AnchoredDesign::testing::RMSD_only_this ("AnchoredDesign:testing:RMSD_only_this") |
| BooleanOptionKey const | AnchoredDesign::testing::anchor_noise_constraints_mode ("AnchoredDesign:testing:anchor_noise_constraints_mode") |
| BooleanOptionKey const | AnchoredDesign::testing::super_secret_fixed_interface_mode ("AnchoredDesign:testing:super_secret_fixed_interface_mode") |
| BooleanOptionKey const | AnchoredDesign::testing::randomize_input_sequence ("AnchoredDesign:testing:randomize_input_sequence") |
| BooleanOptionKey const | simple_metrics::simple_metrics ("simple_metrics") |
| BooleanOptionKey const | simple_metrics::use_name_as_custom_type ("simple_metrics:use_name_as_custom_type") |
| BooleanOptionKey const | simple_metrics::use_name_as_metric ("simple_metrics:use_name_as_metric") |
| BooleanOptionKey const | antibody::antibody ("antibody") |
| StringOptionKey const | antibody::input_ab_scheme ("antibody:input_ab_scheme") |
| StringOptionKey const | antibody::output_ab_scheme ("antibody:output_ab_scheme") |
| StringOptionKey const | antibody::cdr_definition ("antibody:cdr_definition") |
| StringOptionKey const | antibody::light_chain ("antibody:light_chain") |
| BooleanOptionKey const | antibody::check_cdr_chainbreaks ("antibody:check_cdr_chainbreaks") |
| BooleanOptionKey const | antibody::check_cdr_pep_bond_geom ("antibody:check_cdr_pep_bond_geom") |
| BooleanOptionKey const | antibody::constrain_cter ("antibody:constrain_cter") |
| BooleanOptionKey const | antibody::auto_generate_kink_constraint ("antibody:auto_generate_kink_constraint") |
| BooleanOptionKey const | antibody::all_atom_mode_kink_constraint ("antibody:all_atom_mode_kink_constraint") |
| StringOptionKey const | antibody::numbering_scheme ("antibody:numbering_scheme") |
| BooleanOptionKey const | antibody::graft_l1 ("antibody:graft_l1") |
| StringOptionKey const | antibody::l1_template ("antibody:l1_template") |
| BooleanOptionKey const | antibody::graft_l2 ("antibody:graft_l2") |
| StringOptionKey const | antibody::l2_template ("antibody:l2_template") |
| BooleanOptionKey const | antibody::graft_l3 ("antibody:graft_l3") |
| StringOptionKey const | antibody::l3_template ("antibody:l3_template") |
| BooleanOptionKey const | antibody::graft_h1 ("antibody:graft_h1") |
| StringOptionKey const | antibody::h1_template ("antibody:h1_template") |
| BooleanOptionKey const | antibody::graft_h2 ("antibody:graft_h2") |
| StringOptionKey const | antibody::h2_template ("antibody:h2_template") |
| BooleanOptionKey const | antibody::graft_h3 ("antibody:graft_h3") |
| StringOptionKey const | antibody::h3_template ("antibody:h3_template") |
| StringOptionKey const | antibody::light_heavy_template ("antibody:light_heavy_template") |
| StringOptionKey const | antibody::frl_template ("antibody:frl_template") |
| StringOptionKey const | antibody::frh_template ("antibody:frh_template") |
| BooleanOptionKey const | antibody::run_snugdock ("antibody:run_snugdock") |
| BooleanOptionKey const | antibody::h3_no_stem_graft ("antibody:h3_no_stem_graft") |
| BooleanOptionKey const | antibody::packonly_after_graft ("antibody:packonly_after_graft") |
| BooleanOptionKey const | antibody::stem_optimize ("antibody:stem_optimize") |
| IntegerOptionKey const | antibody::stem_optimize_size ("antibody:stem_optimize_size") |
| StringOptionKey const | antibody::preprocessing_script_version ("antibody:preprocessing_script_version") |
| BooleanOptionKey const | antibody::model_h3 ("antibody:model_h3") |
| BooleanOptionKey const | antibody::snugfit ("antibody:snugfit") |
| BooleanOptionKey const | antibody::refine_h3 ("antibody:refine_h3") |
| BooleanOptionKey const | antibody::h3_filter ("antibody:h3_filter") |
| RealOptionKey const | antibody::h3_filter_tolerance ("antibody:h3_filter_tolerance") |
| BooleanOptionKey const | antibody::sc_min ("antibody:sc_min") |
| BooleanOptionKey const | antibody::rt_min ("antibody:rt_min") |
| BooleanOptionKey const | antibody::extend_h3_before_modeling ("antibody:extend_h3_before_modeling") |
| StringOptionKey const | antibody::centroid_refine ("antibody:centroid_refine") |
| BooleanOptionKey const | antibody::h3_loop_csts_lr ("antibody:h3_loop_csts_lr") |
| BooleanOptionKey const | antibody::h3_loop_csts_hr ("antibody:h3_loop_csts_hr") |
| BooleanOptionKey const | antibody::auto_generate_h3_kink_constraint ("antibody:auto_generate_h3_kink_constraint") |
| BooleanOptionKey const | antibody::constrain_vlvh_qq ("antibody:constrain_vlvh_qq") |
| BooleanOptionKey const | antibody::snug_loops ("antibody:snug_loops") |
| FileOptionKey const | antibody::input_fv ("antibody:input_fv") |
| BooleanOptionKey const | antibody::camelid ("antibody:camelid") |
| BooleanOptionKey const | antibody::camelid_constraints ("antibody:camelid_constraints") |
| BooleanOptionKey const | antibody::use_mean_cluster_cst_data ("antibody:use_mean_cluster_cst_data") |
| BooleanOptionKey const | antibody::force_use_of_cluster_csts_with_outliers ("antibody:force_use_of_cluster_csts_with_outliers") |
| IntegerOptionKey const | antibody::cluster_csts_stats_cutoff ("antibody:cluster_csts_stats_cutoff") |
| RealOptionKey const | antibody::general_dihedral_cst_phi_sd ("antibody:general_dihedral_cst_phi_sd") |
| RealOptionKey const | antibody::general_dihedral_cst_psi_sd ("antibody:general_dihedral_cst_psi_sd") |
| BooleanOptionKey const | antibody::allow_omega_mismatches_for_north_clusters ("antibody:allow_omega_mismatches_for_north_clusters") |
| StringOptionKey const | antibody::prefix ("antibody:prefix") |
| StringOptionKey const | antibody::grafting_database ("antibody:grafting_database") |
| StringOptionKey const | antibody::blastp ("antibody:blastp") |
| StringVectorOptionKey const | antibody::exclude_pdbs ("antibody:exclude_pdbs") |
| BooleanOptionKey const | antibody::exclude_homologs ("antibody:exclude_homologs") |
| RealOptionKey const | antibody::exclude_homologs_cdr_cutoff ("antibody:exclude_homologs_cdr_cutoff") |
| RealOptionKey const | antibody::exclude_homologs_fr_cutoff ("antibody:exclude_homologs_fr_cutoff") |
| RealOptionKey const | antibody::ocd_cutoff ("antibody:ocd_cutoff") |
| RealOptionKey const | antibody::bfactor_cutoff ("antibody:bfactor_cutoff") |
| IntegerOptionKey const | antibody::n_multi_templates ("antibody:n_multi_templates") |
| StringOptionKey const | antibody::json_cdr ("antibody:json_cdr") |
| BooleanOptionKey const | antibody::design::design ("antibody:design") |
| BooleanOptionKey const | antibody::design::view ("antibody:design:view") |
| StringOptionKey const | antibody::design::base_cdr_instructions ("antibody:design:base_cdr_instructions") |
| StringOptionKey const | antibody::design::cdr_instructions ("antibody:design:cdr_instructions") |
| StringOptionKey const | antibody::design::antibody_database ("antibody:design:antibody_database") |
| BooleanOptionKey const | antibody::design::paper_ab_db ("antibody:design:paper_ab_db") |
| StringOptionKey const | antibody::design::paper_ab_db_path ("antibody:design:paper_ab_db_path") |
| StringVectorOptionKey const | antibody::design::seq_design_cdrs ("antibody:design:seq_design_cdrs") |
| StringVectorOptionKey const | antibody::design::graft_design_cdrs ("antibody:design:graft_design_cdrs") |
| StringVectorOptionKey const | antibody::design::primary_cdrs ("antibody:design:primary_cdrs") |
| StringOptionKey const | antibody::design::mintype ("antibody:design:mintype") |
| StringVectorOptionKey const | antibody::design::disallow_aa ("antibody:design:disallow_aa") |
| IntegerOptionKey const | antibody::design::top_designs ("antibody:design:top_designs") |
| BooleanOptionKey const | antibody::design::high_mem_mode ("antibody:design:high_mem_mode") |
| IntegerOptionKey const | antibody::design::cdr_set_cache_limit ("antibody:design:cdr_set_cache_limit") |
| StringOptionKey const | antibody::design::design_protocol ("antibody:design:design_protocol") |
| BooleanOptionKey const | antibody::design::run_relax ("antibody:design:run_relax") |
| BooleanOptionKey const | antibody::design::run_interface_analyzer ("antibody:design:run_interface_analyzer") |
| StringVectorOptionKey const | antibody::design::paratope ("antibody:design:paratope") |
| StringVectorOptionKey const | antibody::design::epitope ("antibody:design:epitope") |
| BooleanOptionKey const | antibody::design::use_epitope_constraints ("antibody:design:use_epitope_constraints") |
| RealOptionKey const | antibody::design::dihedral_cst_weight ("antibody:design:dihedral_cst_weight") |
| RealOptionKey const | antibody::design::atom_pair_cst_weight ("antibody:design:atom_pair_cst_weight") |
| BooleanOptionKey const | antibody::design::global_dihedral_cst_scoring ("antibody:design:global_dihedral_cst_scoring") |
| BooleanOptionKey const | antibody::design::global_atom_pair_cst_scoring ("antibody:design:global_atom_pair_cst_scoring") |
| BooleanOptionKey const | antibody::design::do_dock ("antibody:design:do_dock") |
| IntegerOptionKey const | antibody::design::dock_first_cycles ("antibody:design:dock_first_cycles") |
| IntegerOptionKey const | antibody::design::dock_second_cycles ("antibody:design:dock_second_cycles") |
| IntegerOptionKey const | antibody::design::outer_cycle_rounds ("antibody:design:outer_cycle_rounds") |
| IntegerOptionKey const | antibody::design::inner_cycle_rounds ("antibody:design:inner_cycle_rounds") |
| IntegerOptionKey const | antibody::design::dock_cycle_rounds ("antibody:design:dock_cycle_rounds") |
| IntegerOptionKey const | antibody::design::relax_cycle_rounds ("antibody:design:relax_cycle_rounds") |
| RealOptionKey const | antibody::design::interface_dis ("antibody:design:interface_dis") |
| RealOptionKey const | antibody::design::neighbor_dis ("antibody:design:neighbor_dis") |
| BooleanOptionKey const | antibody::design::use_outliers ("antibody:design:use_outliers") |
| BooleanOptionKey const | antibody::design::use_H3_graft_outliers ("antibody:design:use_H3_graft_outliers") |
| BooleanOptionKey const | antibody::design::use_only_H3_kinked ("antibody:design:use_only_H3_kinked") |
| BooleanOptionKey const | antibody::design::design_antigen ("antibody:design:design_antigen") |
| BooleanOptionKey const | antibody::design::design_framework ("antibody:design:design_framework") |
| BooleanOptionKey const | antibody::design::conservative_framework_design ("antibody:design:conservative_framework_design") |
| BooleanOptionKey const | antibody::design::design_H3_stem ("antibody:design:design_H3_stem") |
| BooleanOptionKey const | antibody::design::design_proline ("antibody:design:design_proline") |
| RealOptionKey const | antibody::design::sample_zero_probs_at ("antibody:design:sample_zero_probs_at") |
| BooleanOptionKey const | antibody::design::force_mutate_framework_for_cluster ("antibody:design:force_mutate_framework_for_cluster") |
| BooleanOptionKey const | antibody::design::no_profile_probabilities ("antibody:design:no_profile_probabilities") |
| IntegerOptionKey const | antibody::design::seq_design_stats_cutoff ("antibody:design:seq_design_stats_cutoff") |
| IntegerOptionKey const | antibody::design::seq_design_profile_samples ("antibody:design:seq_design_profile_samples") |
| BooleanOptionKey const | antibody::design::idealize_graft_cdrs ("antibody:design:idealize_graft_cdrs") |
| StringVectorOptionKey const | antibody::design::add_backrub_pivots ("antibody:design:add_backrub_pivots") |
| RealOptionKey const | antibody::design::inner_kt ("antibody:design:inner_kt") |
| RealOptionKey const | antibody::design::outer_kt ("antibody:design:outer_kt") |
| BooleanOptionKey const | antibody::design::random_start ("antibody:design:random_start") |
| BooleanOptionKey const | antibody::design::adapt_graft ("antibody:design:adapt_graft") |
| BooleanOptionKey const | antibody::design::enable_adapt_graft_cartesian ("antibody:design:enable_adapt_graft_cartesian") |
| BooleanOptionKey const | antibody::design::remove_antigen ("antibody:design:remove_antigen") |
| BooleanOptionKey const | antibody::design::add_graft_log_to_pdb ("antibody:design:add_graft_log_to_pdb") |
| BooleanOptionKey const | antibody::design::mutate_framework_for_cluster ("antibody:design:mutate_framework_for_cluster") |
| BooleanOptionKey const | task_operations::task_operations ("task_operations") |
| StringOptionKey const | task_operations::cons_design_data_source ("task_operations:cons_design_data_source") |
| BooleanOptionKey const | assembly::assembly ("assembly") |
| FileOptionKey const | assembly::pdb1 ("assembly:pdb1") |
| FileOptionKey const | assembly::pdb2 ("assembly:pdb2") |
| BooleanOptionKey const | backrub::backrub ("backrub") |
| IntegerVectorOptionKey const | backrub::pivot_residues ("backrub:pivot_residues") |
| StringVectorOptionKey const | backrub::pivot_atoms ("backrub:pivot_atoms") |
| IntegerOptionKey const | backrub::min_atoms ("backrub:min_atoms") |
| IntegerOptionKey const | backrub::max_atoms ("backrub:max_atoms") |
| IntegerOptionKey const | backrub::ntrials ("backrub:ntrials") |
| RealOptionKey const | backrub::sc_prob ("backrub:sc_prob") |
| RealOptionKey const | backrub::sm_prob ("backrub:sm_prob") |
| RealOptionKey const | backrub::sc_prob_uniform ("backrub:sc_prob_uniform") |
| RealOptionKey const | backrub::sc_prob_withinrot ("backrub:sc_prob_withinrot") |
| RealOptionKey const | backrub::mc_kt ("backrub:mc_kt") |
| RealOptionKey const | backrub::mm_bend_weight ("backrub:mm_bend_weight") |
| BooleanOptionKey const | backrub::initial_pack ("backrub:initial_pack") |
| FileOptionKey const | backrub::minimize_movemap ("backrub:minimize_movemap") |
| BooleanOptionKey const | backrub::trajectory ("backrub:trajectory") |
| BooleanOptionKey const | backrub::trajectory_gz ("backrub:trajectory_gz") |
| IntegerOptionKey const | backrub::trajectory_stride ("backrub:trajectory_stride") |
| BooleanOptionKey const | batch_relax::batch_relax ("batch_relax") |
| IntegerOptionKey const | batch_relax::batch_size ("batch_relax:batch_size") |
| BooleanOptionKey const | bbg::bbg ("bbg") |
| RealOptionKey const | bbg::factorA ("bbg:factorA") |
| RealOptionKey const | bbg::factorB ("bbg:factorB") |
| BooleanOptionKey const | bbg::ignore_improper_res ("bbg:ignore_improper_res") |
| BooleanOptionKey const | bbg::fix_short_segment ("bbg:fix_short_segment") |
| BooleanOptionKey const | boinc::boinc ("boinc") |
| BooleanOptionKey const | boinc::graphics ("boinc:graphics") |
| BooleanOptionKey const | boinc::fullscreen ("boinc:fullscreen") |
| IntegerOptionKey const | boinc::max_fps ("boinc:max_fps") |
| IntegerOptionKey const | boinc::max_cpu ("boinc:max_cpu") |
| BooleanOptionKey const | boinc::noshmem ("boinc:noshmem") |
| IntegerOptionKey const | boinc::cpu_run_time ("boinc:cpu_run_time") |
| IntegerOptionKey const | boinc::max_nstruct ("boinc:max_nstruct") |
| RealOptionKey const | boinc::cpu_frac ("boinc:cpu_frac") |
| RealOptionKey const | boinc::frame_rate ("boinc:frame_rate") |
| BooleanOptionKey const | boinc::watchdog ("boinc:watchdog") |
| IntegerOptionKey const | boinc::watchdog_time ("boinc:watchdog_time") |
| IntegerOptionKey const | boinc::cpu_run_timeout ("boinc:cpu_run_timeout") |
| FileOptionKey const | boinc::description_file ("boinc:description_file") |
| RealOptionKey const | boinc::score_cut_pct ("boinc:score_cut_pct") |
| FileOptionKey const | boinc::score_cut_fl ("boinc:score_cut_fl") |
| BooleanOptionKey const | boinc::score_cut_smart_throttle ("boinc:score_cut_smart_throttle") |
| BooleanOptionKey const | broker::broker ("broker") |
| FileVectorOptionKey const | broker::setup ("broker:setup") |
| RealOptionKey const | broker::rb_mover_stage1_weight ("broker:rb_mover_stage1_weight") |
| RealOptionKey const | broker::large_frag_mover_stage1_weight ("broker:large_frag_mover_stage1_weight") |
| RealOptionKey const | broker::small_frag_mover_stage1_weight ("broker:small_frag_mover_stage1_weight") |
| BooleanOptionKey const | bunsat_calc2::bunsat_calc2 ("bunsat_calc2") |
| RealOptionKey const | bunsat_calc2::sasa_burial_cutoff ("bunsat_calc2:sasa_burial_cutoff") |
| BooleanOptionKey const | bunsat_calc2::layered_sasa ("bunsat_calc2:layered_sasa") |
1.9.1