AnchoredDesign Namespace Reference

Namespaces
	akash
	filters
	testing

Functions
BooleanOptionKey const	AnchoredDesign ("AnchoredDesign")
FileOptionKey const	anchor ("AnchoredDesign:anchor")
BooleanOptionKey const	allow_anchor_repack ("AnchoredDesign:allow_anchor_repack")
BooleanOptionKey const	vary_cutpoints ("AnchoredDesign:vary_cutpoints")
BooleanOptionKey const	no_frags ("AnchoredDesign:no_frags")
BooleanOptionKey const	debug ("AnchoredDesign:debug")
BooleanOptionKey const	show_extended ("AnchoredDesign:show_extended")
BooleanOptionKey const	refine_only ("AnchoredDesign:refine_only")
BooleanOptionKey const	perturb_show ("AnchoredDesign:perturb_show")
IntegerOptionKey const	perturb_cycles ("AnchoredDesign:perturb_cycles")
RealOptionKey const	perturb_temp ("AnchoredDesign:perturb_temp")
BooleanOptionKey const	perturb_CCD_off ("AnchoredDesign:perturb_CCD_off")
BooleanOptionKey const	perturb_KIC_off ("AnchoredDesign:perturb_KIC_off")
BooleanOptionKey const	refine_CCD_off ("AnchoredDesign:refine_CCD_off")
BooleanOptionKey const	refine_KIC_off ("AnchoredDesign:refine_KIC_off")
IntegerOptionKey const	refine_cycles ("AnchoredDesign:refine_cycles")
RealOptionKey const	refine_temp ("AnchoredDesign:refine_temp")
IntegerOptionKey const	refine_repack_cycles ("AnchoredDesign:refine_repack_cycles")
BooleanOptionKey const	rmsd ("AnchoredDesign:rmsd")
BooleanOptionKey const	unbound_mode ("AnchoredDesign:unbound_mode")
RealOptionKey const	chainbreak_weight ("AnchoredDesign:chainbreak_weight")

Function Documentation

allow_anchor_repack()

BooleanOptionKey const AnchoredDesign::allow_anchor_repack

(

"AnchoredDesign:allow_anchor_repack"

)

anchor()

FileOptionKey const AnchoredDesign::anchor

(

"AnchoredDesign:anchor"

)

AnchoredDesign()

BooleanOptionKey const AnchoredDesign::AnchoredDesign

(

"AnchoredDesign"

)

chainbreak_weight()

RealOptionKey const AnchoredDesign::chainbreak_weight

(

"AnchoredDesign:chainbreak_weight"

)

debug()

BooleanOptionKey const AnchoredDesign::debug

(

"AnchoredDesign:debug"

)

no_frags()

BooleanOptionKey const AnchoredDesign::no_frags

(

"AnchoredDesign:no_frags"

)

perturb_CCD_off()

BooleanOptionKey const AnchoredDesign::perturb_CCD_off

(

"AnchoredDesign:perturb_CCD_off"

)

perturb_cycles()

IntegerOptionKey const AnchoredDesign::perturb_cycles

(

"AnchoredDesign:perturb_cycles"

)

perturb_KIC_off()

BooleanOptionKey const AnchoredDesign::perturb_KIC_off

(

"AnchoredDesign:perturb_KIC_off"

)

perturb_show()

BooleanOptionKey const AnchoredDesign::perturb_show

(

"AnchoredDesign:perturb_show"

)

perturb_temp()

RealOptionKey const AnchoredDesign::perturb_temp

(

"AnchoredDesign:perturb_temp"

)

refine_CCD_off()

BooleanOptionKey const AnchoredDesign::refine_CCD_off

(

"AnchoredDesign:refine_CCD_off"

)

refine_cycles()

IntegerOptionKey const AnchoredDesign::refine_cycles

(

"AnchoredDesign:refine_cycles"

)

refine_KIC_off()

BooleanOptionKey const AnchoredDesign::refine_KIC_off

(

"AnchoredDesign:refine_KIC_off"

)

refine_only()

BooleanOptionKey const AnchoredDesign::refine_only

(

"AnchoredDesign:refine_only"

)

refine_repack_cycles()

IntegerOptionKey const AnchoredDesign::refine_repack_cycles

(

"AnchoredDesign:refine_repack_cycles"

)

refine_temp()

RealOptionKey const AnchoredDesign::refine_temp

(

"AnchoredDesign:refine_temp"

)

rmsd()

BooleanOptionKey const AnchoredDesign::rmsd

(

"AnchoredDesign:rmsd"

)

show_extended()

BooleanOptionKey const AnchoredDesign::show_extended

(

"AnchoredDesign:show_extended"

)

unbound_mode()

BooleanOptionKey const AnchoredDesign::unbound_mode

(

"AnchoredDesign:unbound_mode"

)

vary_cutpoints()

BooleanOptionKey const AnchoredDesign::vary_cutpoints

(

"AnchoredDesign:vary_cutpoints"

)