3d_histogram Namespace Reference

Variables
	parser = argparse.ArgumentParser()
	type
	int
	default
	arguments = parser.parse_args()
	fig = plt.figure()
	data = np.load(os.path.join(arguments.job, 'histogram/torsions.npz'))
	phi = data['phi' + arguments.residue]
	psi = data['psi' + arguments.residue]
	hist
	xedges
	yedges
	bins
	interpolation
	residue
	rotation
	ticks = np.arange(0, 360, 60)
	x = np.array(x)
	y = np.array(y)
	xpos = xpos.flatten()/2.
	ypos = ypos.flatten()/2.
	zpos = np.zeros_like (xpos)
	dx = xedges [1] - xedges [0]
	dy = yedges [1] - yedges [0]
	dz = hist.flatten()

Variable Documentation

arguments

3d_histogram.arguments = parser.parse_args()

bins

3d_histogram.bins

data

3d_histogram.data = np.load(os.path.join(arguments.job, 'histogram/torsions.npz'))

default

3d_histogram.default

dx

3d_histogram.dx = xedges [1] - xedges [0]

Referenced by check_silent_error(), collect_stats(), distance(), dock(), get_deriv(), main(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.mouseMoveEvent(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget.mouseMoveEvent(), and numeric::statistics.w().

dy

3d_histogram.dy = yedges [1] - yedges [0]

Referenced by numeric::interpolation::spline::SplineGenerator.add_known_value(), check_silent_error(), collect_stats(), numeric::interpolation::Histogram< X, Y >.derivative(), distance(), get_deriv(), numeric::interpolation::spline::CompoundInterpolator.interpolate(), numeric::interpolation::spline::SimpleInterpolator.interpolate(), numeric::interpolation::Histogram< X, Y >.interpolate(), numeric::interpolation::Histogram< X, Y >.interpolate_spline(), main(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.mouseMoveEvent(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget.mouseMoveEvent(), and numeric::interpolation::spline.spline_interpolate().

dz

3d_histogram.dz = hist.flatten()

Referenced by check_silent_error(), collect_stats(), distance(), get_deriv(), isctfast(), main(), ui::ui_core::pose_draw::SimplePoseDrawOpenGLWidget.mouseMoveEvent(), ui::ui_protocols::helical_bundle::HelicalBundlePoseDrawOpenGLWidget.mouseMoveEvent(), sic_fast_x(), and sicfast().

fig

3d_histogram.fig = plt.figure()

hist

3d_histogram.hist

Referenced by doit(), double_helix_test(), helix_ST(), main(), one_chain_MC_sampling(), one_chain_ST_MC(), and gaussian-sampling.plot_histogram().

int

3d_histogram.int

interpolation

3d_histogram.interpolation

parser

3d_histogram.parser = argparse.ArgumentParser()

phi

3d_histogram.phi = data['phi' + arguments.residue]

psi

3d_histogram.psi = data['psi' + arguments.residue]

residue

3d_histogram.residue

rotation

3d_histogram.rotation

Referenced by numeric::EulerAngles< T >.angular_distance_between(), fiberHit.as_string(), density_grid_search(), fiberHit.fiberHit(), main(), numeric::linear_algebra.minimum_bounding_ellipse(), move_it(), numeric::linear_algebra.point_in_ellipse(), Results_Keeper.Results_Keeper(), RT_from_epos(), and transform_pose().

ticks

3d_histogram.ticks = np.arange(0, 360, 60)

type

3d_histogram.type

x

3d_histogram.x = np.array(x)

xedges

3d_histogram.xedges

xpos

int 3d_histogram.xpos = xpos.flatten()/2.

y

3d_histogram.y = np.array(y)

yedges

3d_histogram.yedges

ypos

int 3d_histogram.ypos = ypos.flatten()/2.

zpos

3d_histogram.zpos = np.zeros_like (xpos)