ScoreEach.bench.hh File Reference

#include <apps/benchmark/performance/performance_benchmark.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/methods/OneBodyEnergy.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/ShortRangeTwoBodyEnergy.hh>
#include <core/scoring/methods/LongRangeTwoBodyEnergy.hh>
#include <core/scoring/LREnergyContainer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>

Classes
class	ScoreEachBenchmark

Variables
ScoreEachBenchmark	Score_ref_ ("core.scoring.Score_100000x_ref", ref, 100000)
ScoreEachBenchmark	Score_yhh_planarity_ ("core.scoring.Score_10000x_yhh_planarity", yhh_planarity, 10000)
ScoreEachBenchmark	Score_cbeta_ ("core.scoring.Score_10000x_cbeta", cbeta, 10000,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_env_ ("core.scoring.Score_5000x_env", env, 5000,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_fa_pair_ ("core.scoring.Score_100x_fa_pair", fa_pair, 100)
ScoreEachBenchmark	Score_fa_pair_aro_aro_ ("core.scoring.Score_100x_fa_pair_aro_aro", fa_pair_aro_aro, 100)
ScoreEachBenchmark	Score_fa_pair_aro_pol_ ("core.scoring.Score_100x_fa_pair_aro_pol", fa_pair_aro_pol, 100)
ScoreEachBenchmark	Score_fa_pair_pol_pol_ ("core.scoring.Score_100x_fa_pair_pol_pol", fa_pair_pol_pol, 100)
ScoreEachBenchmark	Score_omega_ ("core.scoring.Score_10000x_omega", omega, 10000)
ScoreEachBenchmark	Score_rama_ ("core.scoring.Score_10000x_rama", rama, 10000)
ScoreEachBenchmark	Score_rama2b_ ("core.scoring.Score_10000x_rama2b", rama2b, 10000)
ScoreEachBenchmark	Score_p_aa_pp_ ("core.scoring.Score_1000x_p_aa_pp", p_aa_pp, 1000)
ScoreEachBenchmark	Score_p_aa_ ("core.scoring.Score_40000x_p_aa", p_aa, 40000)
ScoreEachBenchmark	Score_mm_lj_intra_rep_ ("core.scoring.Score_1000x_mm_lj_intra_rep", mm_lj_intra_rep, 1000)
ScoreEachBenchmark	Score_mm_lj_intra_atr_ ("core.scoring.Score_1000x_mm_lj_intra_atr", mm_lj_intra_atr, 1000)
ScoreEachBenchmark	Score_unfolded_ ("core.scoring.Score_1000x_unfolded", unfolded, 1000)
ScoreEachBenchmark	Score_e_pH_ ("core.scoring.Score_1000x_e_pH", e_pH, 1000)
ScoreEachBenchmark	Score_dslf_ss_dst_ ("core.scoring.Score_1000x_dslf_ss_dst", dslf_ss_dst, 1000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_dslf_cs_ang_ ("core.scoring.Score_1000x_dslf_cs_ang", dslf_cs_ang, 1000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_dslf_ss_dih_ ("core.scoring.Score_1000x_dslf_ss_dih", dslf_ss_dih, 1000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_dslf_ca_dih_ ("core.scoring.Score_1000x_dslf_ca_dih", dslf_ca_dih, 1000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_dslf_cbs_ds_ ("core.scoring.Score_1000x_dslf_cbs_ds", dslf_cbs_ds, 1000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_dslf_fa13_ ("core.scoring.Score_10000x_dslf_fa13", dslf_fa13, 10000,"1bbi_disulf.pdb")
ScoreEachBenchmark	Score_cen_env_smooth_ ("core.scoring.Score_10000x_cen_env_smooth", cen_env_smooth, 10000,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_cbeta_smooth_ ("core.scoring.Score_10000x_cbeta_smooth", cbeta_smooth, 10000,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_pro_close_ ("core.scoring.Score_1000x_pro_close", pro_close, 1000)
ScoreEachBenchmark	Score_fa_dun_ ("core.scoring.Score_100x_fa_dun", fa_dun, 100)
ScoreEachBenchmark	Score_fa_dun_dev_ ("core.scoring.Score_100x_fa_dun_dev", fa_dun_dev, 100)
ScoreEachBenchmark	Score_fa_dun_rot_ ("core.scoring.Score_100x_fa_dun_rot", fa_dun_rot, 100)
ScoreEachBenchmark	Score_fa_dun_semi_ ("core.scoring.Score_100x_fa_dun_semi", fa_dun_semi, 100)
ScoreEachBenchmark	Score_ref_nc_ ("core.scoring.Score_100x_ref_nc", ref_nc, 100)
ScoreEachBenchmark	Score_co_ ("core.scoring.Score_100x_co", co, 100)
ScoreEachBenchmark	Score_chainbreak_ ("core.scoring.Score_100x_chainbreak", chainbreak, 100)
ScoreEachBenchmark	Score_linear_chainbreak_ ("core.scoring.Score_100x_linear_chainbreak", linear_chainbreak, 100)
ScoreEachBenchmark	Score_overlap_chainbreak_ ("core.scoring.Score_100x_overlap_chainbreak", overlap_chainbreak, 100)
ScoreEachBenchmark	Score_distance_chainbreak_ ("core.scoring.Score_100x_distance_chainbreak", distance_chainbreak, 100)
ScoreEachBenchmark	Score_cart_bonded_ ("core.scoring.Score_100x_cart_bonded", cart_bonded, 100)
ScoreEachBenchmark	Score_mm_stretch_ ("core.scoring.Score_1000x_mm_stretch", mm_stretch, 1000)
ScoreEachBenchmark	Score_ch_bond_ ("core.scoring.Score_100x_ch_bond", ch_bond, 100)
ScoreEachBenchmark	Score_neigh_vect_ ("core.scoring.Score_100x_neigh_vect", neigh_vect, 100)
ScoreEachBenchmark	Score_hbond_sr_bb_ ("core.scoring.Score_100x_hbond_sr_bb", hbond_sr_bb, 100)
ScoreEachBenchmark	Score_hbond_lr_bb_ ("core.scoring.Score_100x_hbond_lr_bb", hbond_lr_bb, 100)
ScoreEachBenchmark	Score_hbond_bb_sc_ ("core.scoring.Score_100x_hbond_bb_sc", hbond_bb_sc, 100)
ScoreEachBenchmark	Score_hbond_sr_bb_sc_ ("core.scoring.Score_100x_hbond_sr_bb_sc", hbond_sr_bb_sc, 100)
ScoreEachBenchmark	Score_hbond_lr_bb_sc_ ("core.scoring.Score_100x_hbond_lr_bb_sc", hbond_lr_bb_sc, 100)
ScoreEachBenchmark	Score_hbond_sc_ ("core.scoring.Score_100x_hbond_sc", hbond_sc, 100)
ScoreEachBenchmark	Score_envsmooth_ ("core.scoring.Score_100x_envsmooth", envsmooth, 100)
ScoreEachBenchmark	Score_fa_cust_pair_dist_ ("core.scoring.Score_100x_fa_cust_pair_dist", fa_cust_pair_dist, 100)
ScoreEachBenchmark	Score_rg_ ("core.scoring.Score_100x_rg", rg, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_hs_pair_ ("core.scoring.Score_100x_hs_pair", hs_pair, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_ss_pair_ ("core.scoring.Score_100x_ss_pair", ss_pair, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_rsigma_ ("core.scoring.Score_100x_rsigma", rsigma, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_sheet_ ("core.scoring.Score_100x_sheet", sheet, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_vdw_ ("core.scoring.Score_100x_vdw", vdw, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_cen_pair_smooth_ ("core.scoring.Score_100x_cen_pair_smooth", cen_pair_smooth, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_cenpack_smooth_ ("core.scoring.Score_100x_cenpack_smooth", cenpack_smooth, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_cenpack_ ("core.scoring.Score_100x_cenpack", cenpack, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_pair_ ("core.scoring.Score_100x_pair", pair, 100,"test_in_cen.pdb", true)
ScoreEachBenchmark	Score_fa_atr_ ("core.scoring.Score_10x_fa_atr", fa_atr, 10)
ScoreEachBenchmark	Score_fa_rep_ ("core.scoring.Score_10x_fa_rep", fa_rep, 10)
ScoreEachBenchmark	Score_fa_sol_ ("core.scoring.Score_10x_fa_sol", fa_sol, 10)
ScoreEachBenchmark	Score_fa_intra_atr_ ("core.scoring.Score_1000x_fa_intra_atr", fa_intra_atr, 1000)
ScoreEachBenchmark	Score_fa_intra_rep_ ("core.scoring.Score_1000x_fa_intra_rep", fa_intra_rep, 1000)
ScoreEachBenchmark	Score_fa_intra_sol_ ("core.scoring.Score_1000x_fa_intra_sol", fa_intra_sol, 1000)
ScoreEachBenchmark	Score_mm_bend_ ("core.scoring.Score_200x_mm_bend", mm_bend, 200)
ScoreEachBenchmark	Score_mm_twist_ ("core.scoring.Score_200x_mm_twist", mm_twist, 200)
ScoreEachBenchmark	Score_lk_costheta_ ("core.scoring.Score_10x_lk_costheta", lk_costheta, 10)
ScoreEachBenchmark	Score_lk_polar_ ("core.scoring.Score_10x_lk_polar", lk_polar, 10)
ScoreEachBenchmark	Score_lk_nonpolar_ ("core.scoring.Score_10x_lk_nonpolar", lk_nonpolar, 10)
ScoreEachBenchmark	Score_h2o_hbond_ ("core.scoring.Score_100x_h2o_hbond", h2o_hbond, 100)
ScoreEachBenchmark	Score_gauss_ ("core.scoring.Score_10x_gauss", gauss, 10)
ScoreEachBenchmark	Score_occ_sol_fitted_ ("core.scoring.Score_10x_occ_sol_fitted", occ_sol_fitted, 10)
ScoreEachBenchmark	Score_occ_sol_fitted_onebody_ ("core.scoring.Score_5x_occ_sol_fitted_onebody", occ_sol_fitted_onebody, 5)
ScoreEachBenchmark	Score_fa_elec_ ("core.scoring.Score_10x_fa_elec", fa_elec, 10)
ScoreEachBenchmark	Score_sa_ ("core.scoring.Score_1x_sa", sa, 1)
ScoreEachBenchmark	Score_gb_elec_ ("core.scoring.Score_1x_gb_elec", gb_elec, 1)
ScoreEachBenchmark	Score_pack_stat_ ("core.scoring.Score_1x_pack_stat", pack_stat, 1)
ScoreEachBenchmark	Score_occ_sol_exact_ ("core.scoring.Score_1x_occ_sol_exact", occ_sol_exact, 1)

Variable Documentation

Score_cart_bonded_

ScoreEachBenchmark Score_cart_bonded_("core.scoring.Score_100x_cart_bonded", cart_bonded, 100)	(	"core.scoring.Score_100x_cart_bonded"	,
		cart_bonded	,
		100
	)

Score_cbeta_

ScoreEachBenchmark Score_cbeta_("core.scoring.Score_10000x_cbeta", cbeta, 10000,"test_in_cen.pdb", true)	(	"core.scoring.Score_10000x_cbeta"	,
		cbeta	,
		10000	,
		"test_in_cen.pdb"	,
		true
	)

Score_cbeta_smooth_

ScoreEachBenchmark Score_cbeta_smooth_("core.scoring.Score_10000x_cbeta_smooth", cbeta_smooth, 10000,"test_in_cen.pdb", true)	(	"core.scoring.Score_10000x_cbeta_smooth"	,
		cbeta_smooth	,
		10000	,
		"test_in_cen.pdb"	,
		true
	)

Score_cen_env_smooth_

ScoreEachBenchmark Score_cen_env_smooth_("core.scoring.Score_10000x_cen_env_smooth", cen_env_smooth, 10000,"test_in_cen.pdb", true)	(	"core.scoring.Score_10000x_cen_env_smooth"	,
		cen_env_smooth	,
		10000	,
		"test_in_cen.pdb"	,
		true
	)

Score_cen_pair_smooth_

ScoreEachBenchmark Score_cen_pair_smooth_("core.scoring.Score_100x_cen_pair_smooth", cen_pair_smooth, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_cen_pair_smooth"	,
		cen_pair_smooth	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_cenpack_

ScoreEachBenchmark Score_cenpack_("core.scoring.Score_100x_cenpack", cenpack, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_cenpack"	,
		cenpack	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_cenpack_smooth_

ScoreEachBenchmark Score_cenpack_smooth_("core.scoring.Score_100x_cenpack_smooth", cenpack_smooth, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_cenpack_smooth"	,
		cenpack_smooth	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_ch_bond_

ScoreEachBenchmark Score_ch_bond_("core.scoring.Score_100x_ch_bond", ch_bond, 100)	(	"core.scoring.Score_100x_ch_bond"	,
		ch_bond	,
		100
	)

Score_chainbreak_

ScoreEachBenchmark Score_chainbreak_("core.scoring.Score_100x_chainbreak", chainbreak, 100)	(	"core.scoring.Score_100x_chainbreak"	,
		chainbreak	,
		100
	)

Score_co_

ScoreEachBenchmark Score_co_("core.scoring.Score_100x_co", co, 100)	(	"core.scoring.Score_100x_co"	,
		co	,
		100
	)

Score_distance_chainbreak_

ScoreEachBenchmark Score_distance_chainbreak_("core.scoring.Score_100x_distance_chainbreak", distance_chainbreak, 100)	(	"core.scoring.Score_100x_distance_chainbreak"	,
		distance_chainbreak	,
		100
	)

Score_dslf_ca_dih_

ScoreEachBenchmark Score_dslf_ca_dih_("core.scoring.Score_1000x_dslf_ca_dih", dslf_ca_dih, 1000,"1bbi_disulf.pdb")	(	"core.scoring.Score_1000x_dslf_ca_dih"	,
		dslf_ca_dih	,
		1000	,
		"1bbi_disulf.pdb"
	)

Score_dslf_cbs_ds_

ScoreEachBenchmark Score_dslf_cbs_ds_("core.scoring.Score_1000x_dslf_cbs_ds", dslf_cbs_ds, 1000,"1bbi_disulf.pdb")	(	"core.scoring.Score_1000x_dslf_cbs_ds"	,
		dslf_cbs_ds	,
		1000	,
		"1bbi_disulf.pdb"
	)

Score_dslf_cs_ang_

ScoreEachBenchmark Score_dslf_cs_ang_("core.scoring.Score_1000x_dslf_cs_ang", dslf_cs_ang, 1000,"1bbi_disulf.pdb")	(	"core.scoring.Score_1000x_dslf_cs_ang"	,
		dslf_cs_ang	,
		1000	,
		"1bbi_disulf.pdb"
	)

Score_dslf_fa13_

ScoreEachBenchmark Score_dslf_fa13_("core.scoring.Score_10000x_dslf_fa13", dslf_fa13, 10000,"1bbi_disulf.pdb")	(	"core.scoring.Score_10000x_dslf_fa13"	,
		dslf_fa13	,
		10000	,
		"1bbi_disulf.pdb"
	)

Score_dslf_ss_dih_

ScoreEachBenchmark Score_dslf_ss_dih_("core.scoring.Score_1000x_dslf_ss_dih", dslf_ss_dih, 1000,"1bbi_disulf.pdb")	(	"core.scoring.Score_1000x_dslf_ss_dih"	,
		dslf_ss_dih	,
		1000	,
		"1bbi_disulf.pdb"
	)

Score_dslf_ss_dst_

ScoreEachBenchmark Score_dslf_ss_dst_("core.scoring.Score_1000x_dslf_ss_dst", dslf_ss_dst, 1000,"1bbi_disulf.pdb")	(	"core.scoring.Score_1000x_dslf_ss_dst"	,
		dslf_ss_dst	,
		1000	,
		"1bbi_disulf.pdb"
	)

Score_e_pH_

ScoreEachBenchmark Score_e_pH_("core.scoring.Score_1000x_e_pH", e_pH, 1000)	(	"core.scoring.Score_1000x_e_pH"	,
		e_pH	,
		1000
	)

Score_env_

ScoreEachBenchmark Score_env_("core.scoring.Score_5000x_env", env, 5000,"test_in_cen.pdb", true)	(	"core.scoring.Score_5000x_env"	,
		env	,
		5000	,
		"test_in_cen.pdb"	,
		true
	)

Score_envsmooth_

ScoreEachBenchmark Score_envsmooth_("core.scoring.Score_100x_envsmooth", envsmooth, 100)	(	"core.scoring.Score_100x_envsmooth"	,
		envsmooth	,
		100
	)

Score_fa_atr_

ScoreEachBenchmark Score_fa_atr_("core.scoring.Score_10x_fa_atr", fa_atr, 10)	(	"core.scoring.Score_10x_fa_atr"	,
		fa_atr	,
		10
	)

Score_fa_cust_pair_dist_

ScoreEachBenchmark Score_fa_cust_pair_dist_("core.scoring.Score_100x_fa_cust_pair_dist", fa_cust_pair_dist, 100)	(	"core.scoring.Score_100x_fa_cust_pair_dist"	,
		fa_cust_pair_dist	,
		100
	)

Score_fa_dun_

ScoreEachBenchmark Score_fa_dun_("core.scoring.Score_100x_fa_dun", fa_dun, 100)	(	"core.scoring.Score_100x_fa_dun"	,
		fa_dun	,
		100
	)

Score_fa_dun_dev_

ScoreEachBenchmark Score_fa_dun_dev_("core.scoring.Score_100x_fa_dun_dev", fa_dun_dev, 100)	(	"core.scoring.Score_100x_fa_dun_dev"	,
		fa_dun_dev	,
		100
	)

Score_fa_dun_rot_

ScoreEachBenchmark Score_fa_dun_rot_("core.scoring.Score_100x_fa_dun_rot", fa_dun_rot, 100)	(	"core.scoring.Score_100x_fa_dun_rot"	,
		fa_dun_rot	,
		100
	)

Score_fa_dun_semi_

ScoreEachBenchmark Score_fa_dun_semi_("core.scoring.Score_100x_fa_dun_semi", fa_dun_semi, 100)	(	"core.scoring.Score_100x_fa_dun_semi"	,
		fa_dun_semi	,
		100
	)

Score_fa_elec_

ScoreEachBenchmark Score_fa_elec_("core.scoring.Score_10x_fa_elec", fa_elec, 10)	(	"core.scoring.Score_10x_fa_elec"	,
		fa_elec	,
		10
	)

Score_fa_intra_atr_

ScoreEachBenchmark Score_fa_intra_atr_("core.scoring.Score_1000x_fa_intra_atr", fa_intra_atr, 1000)	(	"core.scoring.Score_1000x_fa_intra_atr"	,
		fa_intra_atr	,
		1000
	)

Score_fa_intra_rep_

ScoreEachBenchmark Score_fa_intra_rep_("core.scoring.Score_1000x_fa_intra_rep", fa_intra_rep, 1000)	(	"core.scoring.Score_1000x_fa_intra_rep"	,
		fa_intra_rep	,
		1000
	)

Score_fa_intra_sol_

ScoreEachBenchmark Score_fa_intra_sol_("core.scoring.Score_1000x_fa_intra_sol", fa_intra_sol, 1000)	(	"core.scoring.Score_1000x_fa_intra_sol"	,
		fa_intra_sol	,
		1000
	)

Score_fa_pair_

ScoreEachBenchmark Score_fa_pair_("core.scoring.Score_100x_fa_pair", fa_pair, 100)	(	"core.scoring.Score_100x_fa_pair"	,
		fa_pair	,
		100
	)

Score_fa_pair_aro_aro_

ScoreEachBenchmark Score_fa_pair_aro_aro_("core.scoring.Score_100x_fa_pair_aro_aro", fa_pair_aro_aro, 100)	(	"core.scoring.Score_100x_fa_pair_aro_aro"	,
		fa_pair_aro_aro	,
		100
	)

Score_fa_pair_aro_pol_

ScoreEachBenchmark Score_fa_pair_aro_pol_("core.scoring.Score_100x_fa_pair_aro_pol", fa_pair_aro_pol, 100)	(	"core.scoring.Score_100x_fa_pair_aro_pol"	,
		fa_pair_aro_pol	,
		100
	)

Score_fa_pair_pol_pol_

ScoreEachBenchmark Score_fa_pair_pol_pol_("core.scoring.Score_100x_fa_pair_pol_pol", fa_pair_pol_pol, 100)	(	"core.scoring.Score_100x_fa_pair_pol_pol"	,
		fa_pair_pol_pol	,
		100
	)

Score_fa_rep_

ScoreEachBenchmark Score_fa_rep_("core.scoring.Score_10x_fa_rep", fa_rep, 10)	(	"core.scoring.Score_10x_fa_rep"	,
		fa_rep	,
		10
	)

Score_fa_sol_

ScoreEachBenchmark Score_fa_sol_("core.scoring.Score_10x_fa_sol", fa_sol, 10)	(	"core.scoring.Score_10x_fa_sol"	,
		fa_sol	,
		10
	)

Score_gauss_

ScoreEachBenchmark Score_gauss_("core.scoring.Score_10x_gauss", gauss, 10)	(	"core.scoring.Score_10x_gauss"	,
		gauss	,
		10
	)

Score_gb_elec_

ScoreEachBenchmark Score_gb_elec_("core.scoring.Score_1x_gb_elec", gb_elec, 1)	(	"core.scoring.Score_1x_gb_elec"	,
		gb_elec	,
		1
	)

Score_h2o_hbond_

ScoreEachBenchmark Score_h2o_hbond_("core.scoring.Score_100x_h2o_hbond", h2o_hbond, 100)	(	"core.scoring.Score_100x_h2o_hbond"	,
		h2o_hbond	,
		100
	)

Score_hbond_bb_sc_

ScoreEachBenchmark Score_hbond_bb_sc_("core.scoring.Score_100x_hbond_bb_sc", hbond_bb_sc, 100)	(	"core.scoring.Score_100x_hbond_bb_sc"	,
		hbond_bb_sc	,
		100
	)

Score_hbond_lr_bb_

ScoreEachBenchmark Score_hbond_lr_bb_("core.scoring.Score_100x_hbond_lr_bb", hbond_lr_bb, 100)	(	"core.scoring.Score_100x_hbond_lr_bb"	,
		hbond_lr_bb	,
		100
	)

Score_hbond_lr_bb_sc_

ScoreEachBenchmark Score_hbond_lr_bb_sc_("core.scoring.Score_100x_hbond_lr_bb_sc", hbond_lr_bb_sc, 100)	(	"core.scoring.Score_100x_hbond_lr_bb_sc"	,
		hbond_lr_bb_sc	,
		100
	)

Score_hbond_sc_

ScoreEachBenchmark Score_hbond_sc_("core.scoring.Score_100x_hbond_sc", hbond_sc, 100)	(	"core.scoring.Score_100x_hbond_sc"	,
		hbond_sc	,
		100
	)

Score_hbond_sr_bb_

ScoreEachBenchmark Score_hbond_sr_bb_("core.scoring.Score_100x_hbond_sr_bb", hbond_sr_bb, 100)	(	"core.scoring.Score_100x_hbond_sr_bb"	,
		hbond_sr_bb	,
		100
	)

Score_hbond_sr_bb_sc_

ScoreEachBenchmark Score_hbond_sr_bb_sc_("core.scoring.Score_100x_hbond_sr_bb_sc", hbond_sr_bb_sc, 100)	(	"core.scoring.Score_100x_hbond_sr_bb_sc"	,
		hbond_sr_bb_sc	,
		100
	)

Score_hs_pair_

ScoreEachBenchmark Score_hs_pair_("core.scoring.Score_100x_hs_pair", hs_pair, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_hs_pair"	,
		hs_pair	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_linear_chainbreak_

ScoreEachBenchmark Score_linear_chainbreak_("core.scoring.Score_100x_linear_chainbreak", linear_chainbreak, 100)	(	"core.scoring.Score_100x_linear_chainbreak"	,
		linear_chainbreak	,
		100
	)

Score_lk_costheta_

ScoreEachBenchmark Score_lk_costheta_("core.scoring.Score_10x_lk_costheta", lk_costheta, 10)	(	"core.scoring.Score_10x_lk_costheta"	,
		lk_costheta	,
		10
	)

Score_lk_nonpolar_

ScoreEachBenchmark Score_lk_nonpolar_("core.scoring.Score_10x_lk_nonpolar", lk_nonpolar, 10)	(	"core.scoring.Score_10x_lk_nonpolar"	,
		lk_nonpolar	,
		10
	)

Score_lk_polar_

ScoreEachBenchmark Score_lk_polar_("core.scoring.Score_10x_lk_polar", lk_polar, 10)	(	"core.scoring.Score_10x_lk_polar"	,
		lk_polar	,
		10
	)

Score_mm_bend_

ScoreEachBenchmark Score_mm_bend_("core.scoring.Score_200x_mm_bend", mm_bend, 200)	(	"core.scoring.Score_200x_mm_bend"	,
		mm_bend	,
		200
	)

Score_mm_lj_intra_atr_

ScoreEachBenchmark Score_mm_lj_intra_atr_("core.scoring.Score_1000x_mm_lj_intra_atr", mm_lj_intra_atr, 1000)	(	"core.scoring.Score_1000x_mm_lj_intra_atr"	,
		mm_lj_intra_atr	,
		1000
	)

Score_mm_lj_intra_rep_

ScoreEachBenchmark Score_mm_lj_intra_rep_("core.scoring.Score_1000x_mm_lj_intra_rep", mm_lj_intra_rep, 1000)	(	"core.scoring.Score_1000x_mm_lj_intra_rep"	,
		mm_lj_intra_rep	,
		1000
	)

Score_mm_stretch_

ScoreEachBenchmark Score_mm_stretch_("core.scoring.Score_1000x_mm_stretch", mm_stretch, 1000)	(	"core.scoring.Score_1000x_mm_stretch"	,
		mm_stretch	,
		1000
	)

Score_mm_twist_

ScoreEachBenchmark Score_mm_twist_("core.scoring.Score_200x_mm_twist", mm_twist, 200)	(	"core.scoring.Score_200x_mm_twist"	,
		mm_twist	,
		200
	)

Score_neigh_vect_

ScoreEachBenchmark Score_neigh_vect_("core.scoring.Score_100x_neigh_vect", neigh_vect, 100)	(	"core.scoring.Score_100x_neigh_vect"	,
		neigh_vect	,
		100
	)

Score_occ_sol_exact_

ScoreEachBenchmark Score_occ_sol_exact_("core.scoring.Score_1x_occ_sol_exact", occ_sol_exact, 1)	(	"core.scoring.Score_1x_occ_sol_exact"	,
		occ_sol_exact	,
		1
	)

Score_occ_sol_fitted_

ScoreEachBenchmark Score_occ_sol_fitted_("core.scoring.Score_10x_occ_sol_fitted", occ_sol_fitted, 10)	(	"core.scoring.Score_10x_occ_sol_fitted"	,
		occ_sol_fitted	,
		10
	)

Score_occ_sol_fitted_onebody_

ScoreEachBenchmark Score_occ_sol_fitted_onebody_("core.scoring.Score_5x_occ_sol_fitted_onebody", occ_sol_fitted_onebody, 5)	(	"core.scoring.Score_5x_occ_sol_fitted_onebody"	,
		occ_sol_fitted_onebody	,
		5
	)

Score_omega_

ScoreEachBenchmark Score_omega_("core.scoring.Score_10000x_omega", omega, 10000)	(	"core.scoring.Score_10000x_omega"	,
		omega	,
		10000
	)

Score_overlap_chainbreak_

ScoreEachBenchmark Score_overlap_chainbreak_("core.scoring.Score_100x_overlap_chainbreak", overlap_chainbreak, 100)	(	"core.scoring.Score_100x_overlap_chainbreak"	,
		overlap_chainbreak	,
		100
	)

Score_p_aa_

ScoreEachBenchmark Score_p_aa_("core.scoring.Score_40000x_p_aa", p_aa, 40000)	(	"core.scoring.Score_40000x_p_aa"	,
		p_aa	,
		40000
	)

Score_p_aa_pp_

ScoreEachBenchmark Score_p_aa_pp_("core.scoring.Score_1000x_p_aa_pp", p_aa_pp, 1000)	(	"core.scoring.Score_1000x_p_aa_pp"	,
		p_aa_pp	,
		1000
	)

Score_pack_stat_

ScoreEachBenchmark Score_pack_stat_("core.scoring.Score_1x_pack_stat", pack_stat, 1)	(	"core.scoring.Score_1x_pack_stat"	,
		pack_stat	,
		1
	)

Score_pair_

ScoreEachBenchmark Score_pair_("core.scoring.Score_100x_pair", pair, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_pair"	,
		pair	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_pro_close_

ScoreEachBenchmark Score_pro_close_("core.scoring.Score_1000x_pro_close", pro_close, 1000)	(	"core.scoring.Score_1000x_pro_close"	,
		pro_close	,
		1000
	)

Score_rama2b_

ScoreEachBenchmark Score_rama2b_("core.scoring.Score_10000x_rama2b", rama2b, 10000)	(	"core.scoring.Score_10000x_rama2b"	,
		rama2b	,
		10000
	)

Score_rama_

ScoreEachBenchmark Score_rama_("core.scoring.Score_10000x_rama", rama, 10000)	(	"core.scoring.Score_10000x_rama"	,
		rama	,
		10000
	)

Score_ref_

ScoreEachBenchmark Score_ref_("core.scoring.Score_100000x_ref", ref, 100000)	(	"core.scoring.Score_100000x_ref"	,
		ref	,
		100000
	)

Score_ref_nc_

ScoreEachBenchmark Score_ref_nc_("core.scoring.Score_100x_ref_nc", ref_nc, 100)	(	"core.scoring.Score_100x_ref_nc"	,
		ref_nc	,
		100
	)

Score_rg_

ScoreEachBenchmark Score_rg_("core.scoring.Score_100x_rg", rg, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_rg"	,
		rg	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_rsigma_

ScoreEachBenchmark Score_rsigma_("core.scoring.Score_100x_rsigma", rsigma, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_rsigma"	,
		rsigma	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_sa_

ScoreEachBenchmark Score_sa_("core.scoring.Score_1x_sa", sa, 1)	(	"core.scoring.Score_1x_sa"	,
		sa	,
		1
	)

Score_sheet_

ScoreEachBenchmark Score_sheet_("core.scoring.Score_100x_sheet", sheet, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_sheet"	,
		sheet	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_ss_pair_

ScoreEachBenchmark Score_ss_pair_("core.scoring.Score_100x_ss_pair", ss_pair, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_ss_pair"	,
		ss_pair	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_unfolded_

ScoreEachBenchmark Score_unfolded_("core.scoring.Score_1000x_unfolded", unfolded, 1000)	(	"core.scoring.Score_1000x_unfolded"	,
		unfolded	,
		1000
	)

Score_vdw_

ScoreEachBenchmark Score_vdw_("core.scoring.Score_100x_vdw", vdw, 100,"test_in_cen.pdb", true)	(	"core.scoring.Score_100x_vdw"	,
		vdw	,
		100	,
		"test_in_cen.pdb"	,
		true
	)

Score_yhh_planarity_

ScoreEachBenchmark Score_yhh_planarity_("core.scoring.Score_10000x_yhh_planarity", yhh_planarity, 10000)	(	"core.scoring.Score_10000x_yhh_planarity"	,
		yhh_planarity	,
		10000
	)