trRosetta Namespace Reference

Functions
BooleanOptionKey const	trRosetta ("trRosetta")
FileOptionKey const	msa_file ("trRosetta:msa_file")
StringOptionKey const	write_constraints_to_file ("trRosetta:write_constraints_to_file")
BooleanOptionKey const	only_write_constraints ("trRosetta:only_write_constraints")
BooleanOptionKey const	use_distance_constraints ("trRosetta:use_distance_constraints")
BooleanOptionKey const	use_omega_constraints ("trRosetta:use_omega_constraints")
BooleanOptionKey const	use_theta_constraints ("trRosetta:use_theta_constraints")
BooleanOptionKey const	use_phi_constraints ("trRosetta:use_phi_constraints")
RealOptionKey const	distance_constraint_prob_cutoff ("trRosetta:distance_constraint_prob_cutoff")
RealOptionKey const	omega_constraint_prob_cutoff ("trRosetta:omega_constraint_prob_cutoff")
RealOptionKey const	theta_constraint_prob_cutoff ("trRosetta:theta_constraint_prob_cutoff")
RealOptionKey const	phi_constraint_prob_cutoff ("trRosetta:phi_constraint_prob_cutoff")
StringOptionKey const	backbone_randomization_mode ("trRosetta:backbone_randomization_mode")
StringOptionKey const	backbone_minimization_mode ("trRosetta:backbone_minimization_mode")
RealOptionKey const	cis_peptide_prob_non_prepro ("trRosetta:cis_peptide_prob_non_prepro")
RealOptionKey const	cis_peptide_prob_prepro ("trRosetta:cis_peptide_prob_prepro")
FileOptionKey const	scorefxn0 ("trRosetta:scorefxn0")
FileOptionKey const	scorefxn1 ("trRosetta:scorefxn1")
FileOptionKey const	scorefxn2 ("trRosetta:scorefxn2")
FileOptionKey const	scorefxn3 ("trRosetta:scorefxn3")
FileOptionKey const	scorefxn_fullatom ("trRosetta:scorefxn_fullatom")
BooleanOptionKey const	mutate_gly_to_ala ("trRosetta:mutate_gly_to_ala")
BooleanOptionKey const	fullatom_refinement ("trRosetta:fullatom_refinement")
RealOptionKey const	distance_constraint_weight ("trRosetta:distance_constraint_weight")
RealOptionKey const	phi_constraint_weight ("trRosetta:phi_constraint_weight")
RealOptionKey const	omega_constraint_weight ("trRosetta:omega_constraint_weight")
RealOptionKey const	theta_constraint_weight ("trRosetta:theta_constraint_weight")

Function Documentation

backbone_minimization_mode()

StringOptionKey const trRosetta::backbone_minimization_mode

(

"trRosetta:backbone_minimization_mode"

)

backbone_randomization_mode()

StringOptionKey const trRosetta::backbone_randomization_mode

(

"trRosetta:backbone_randomization_mode"

)

cis_peptide_prob_non_prepro()

RealOptionKey const trRosetta::cis_peptide_prob_non_prepro

(

"trRosetta:cis_peptide_prob_non_prepro"

)

cis_peptide_prob_prepro()

RealOptionKey const trRosetta::cis_peptide_prob_prepro

(

"trRosetta:cis_peptide_prob_prepro"

)

distance_constraint_prob_cutoff()

RealOptionKey const trRosetta::distance_constraint_prob_cutoff

(

"trRosetta:distance_constraint_prob_cutoff"

)

distance_constraint_weight()

RealOptionKey const trRosetta::distance_constraint_weight

(

"trRosetta:distance_constraint_weight"

)

fullatom_refinement()

BooleanOptionKey const trRosetta::fullatom_refinement

(

"trRosetta:fullatom_refinement"

)

msa_file()

FileOptionKey const trRosetta::msa_file

(

"trRosetta:msa_file"

)

mutate_gly_to_ala()

BooleanOptionKey const trRosetta::mutate_gly_to_ala

(

"trRosetta:mutate_gly_to_ala"

)

omega_constraint_prob_cutoff()

RealOptionKey const trRosetta::omega_constraint_prob_cutoff

(

"trRosetta:omega_constraint_prob_cutoff"

)

omega_constraint_weight()

RealOptionKey const trRosetta::omega_constraint_weight

(

"trRosetta:omega_constraint_weight"

)

only_write_constraints()

BooleanOptionKey const trRosetta::only_write_constraints

(

"trRosetta:only_write_constraints"

)

phi_constraint_prob_cutoff()

RealOptionKey const trRosetta::phi_constraint_prob_cutoff

(

"trRosetta:phi_constraint_prob_cutoff"

)

phi_constraint_weight()

RealOptionKey const trRosetta::phi_constraint_weight

(

"trRosetta:phi_constraint_weight"

)

scorefxn0()

FileOptionKey const trRosetta::scorefxn0

(

"trRosetta:scorefxn0"

)

scorefxn1()

FileOptionKey const trRosetta::scorefxn1

(

"trRosetta:scorefxn1"

)

scorefxn2()

FileOptionKey const trRosetta::scorefxn2

(

"trRosetta:scorefxn2"

)

scorefxn3()

FileOptionKey const trRosetta::scorefxn3

(

"trRosetta:scorefxn3"

)

scorefxn_fullatom()

FileOptionKey const trRosetta::scorefxn_fullatom

(

"trRosetta:scorefxn_fullatom"

)

theta_constraint_prob_cutoff()

RealOptionKey const trRosetta::theta_constraint_prob_cutoff

(

"trRosetta:theta_constraint_prob_cutoff"

)

theta_constraint_weight()

RealOptionKey const trRosetta::theta_constraint_weight

(

"trRosetta:theta_constraint_weight"

)

trRosetta()

BooleanOptionKey const trRosetta::trRosetta

(

"trRosetta"

)

use_distance_constraints()

BooleanOptionKey const trRosetta::use_distance_constraints

(

"trRosetta:use_distance_constraints"

)

use_omega_constraints()

BooleanOptionKey const trRosetta::use_omega_constraints

(

"trRosetta:use_omega_constraints"

)

use_phi_constraints()

BooleanOptionKey const trRosetta::use_phi_constraints

(

"trRosetta:use_phi_constraints"

)

use_theta_constraints()

BooleanOptionKey const trRosetta::use_theta_constraints

(

"trRosetta:use_theta_constraints"

)

write_constraints_to_file()

StringOptionKey const trRosetta::write_constraints_to_file

(

"trRosetta:write_constraints_to_file"

)