AbInitio_MPI Class Reference

AbInitio_MPI mover. More...

Inheritance diagram for AbInitio_MPI:

Public Member Functions
	AbInitio_MPI ()
virtual std::string	get_name () const
virtual void	init_on_new_input (core::pose::Pose &pose)
	init_on_new_input system allows for initializing these details the first time apply() is called. More...
virtual	~AbInitio_MPI ()
virtual void	apply (core::pose::Pose &pose)

Private Attributes
bool	init_for_input_yet_
core::fragment::ConstantLengthFragSetOP	fragset_3mer_
core::fragment::ConstantLengthFragSetOP	fragset_9mer_
protocols::moves::SequenceMoverOP	abrelax_
core::pose::Pose	extended_pose_

Detailed Description

AbInitio_MPI mover.

Constructor & Destructor Documentation

AbInitio_MPI()

AbInitio_MPI::AbInitio_MPI ( )

inline

~AbInitio_MPI()

virtual AbInitio_MPI::~AbInitio_MPI ( )

inlinevirtual

Member Function Documentation

apply()

virtual void AbInitio_MPI::apply ( core::pose::Pose &  pose )

inlinevirtual

References abrelax_, extended_pose_, init_for_input_yet_, init_on_new_input(), and beta_nonlocal::pose.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

get_name()

virtual std::string AbInitio_MPI::get_name ( ) const

inlinevirtual

init_on_new_input()

virtual void AbInitio_MPI::init_on_new_input ( core::pose::Pose &  pose )

inlinevirtual

init_on_new_input system allows for initializing these details the first time apply() is called.

References basic::options::OptionKeys::abinitio::abinitio, abrelax_, extended_pose_, basic::options::OptionKeys::in::file::fasta, basic::options::OptionKeys::in::file::frag3, basic::options::OptionKeys::in::file::frag9, fragset_3mer_, fragset_9mer_, init_for_input_yet_, basic::options::OptionKeys::in::file::movemap, basic::options::option, beta_nonlocal::pose, basic::options::OptionKeys::abinitio::relax, basic::options::OptionKeys::in::file::residue_type_set, basic::options::OptionKeys::relax::sequence, and value.

Referenced by apply().

Member Data Documentation

abrelax_

protocols::moves::SequenceMoverOP AbInitio_MPI::abrelax_

private

Referenced by apply(), and init_on_new_input().

extended_pose_

core::pose::Pose AbInitio_MPI::extended_pose_

private

Referenced by apply(), and init_on_new_input().

fragset_3mer_

core::fragment::ConstantLengthFragSetOP AbInitio_MPI::fragset_3mer_

private

Referenced by init_on_new_input().

fragset_9mer_

core::fragment::ConstantLengthFragSetOP AbInitio_MPI::fragset_9mer_

private

Referenced by init_on_new_input().

init_for_input_yet_

bool AbInitio_MPI::init_for_input_yet_

private

Referenced by apply(), and init_on_new_input().

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The documentation for this class was generated from the following file:

• src/apps/pilot/grant/AbInitio_MPI.cc