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Rosetta
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Functions | |
| BooleanOptionKey const | fold_from_loops::native_ca_cst ("fold_from_loops:native_ca_cst") |
| FileOptionKey const | fold_from_loops::swap_loops ("fold_from_loops:swap_loops") |
| StringOptionKey const | fold_from_loops::checkpoint ("fold_from_loops:checkpoint") |
| RealOptionKey const | fold_from_loops::ca_csts_dev ("fold_from_loops:ca_csts_dev") |
| IntegerOptionKey const | fold_from_loops::add_relax_cycles ("fold_from_loops:add_relax_cycles") |
| IntegerOptionKey const | fold_from_loops::loop_mov_nterm ("fold_from_loops:loop_mov_nterm") |
| IntegerOptionKey const | fold_from_loops::loop_mov_cterm ("fold_from_loops:loop_mov_cterm") |
| RealOptionKey const | fold_from_loops::ca_rmsd_cutoff ("fold_from_loops:ca_rmsd_cutoff") |
| IntegerVectorOptionKey const | fold_from_loops::res_design_bs ("fold_from_loops:res_design_bs") |
| FileOptionKey const | fold_from_loops::clear_csts ("fold_from_loops:clear_csts") |
| BooleanOptionKey const | fold_from_loops::output_centroid ("fold_from_loops:output_centroid") |
| BooleanOptionKey const | fold_from_loops::add_cst_loop ("fold_from_loops:add_cst_loop") |
| BooleanOptionKey const | frags::frags ("frags") |
| IntegerOptionKey const | frags::j ("frags:j") |
| BooleanOptionKey const | frags::filter_JC ("frags:filter_JC") |
| BooleanOptionKey const | frags::bounded_protocol ("frags:bounded_protocol") |
| BooleanOptionKey const | frags::keep_all_protocol ("frags:keep_all_protocol") |
| BooleanOptionKey const | frags::quota_protocol ("frags:quota_protocol") |
| BooleanOptionKey const | frags::nonlocal_pairs ("frags:nonlocal_pairs") |
| BooleanOptionKey const | frags::fragment_contacts ("frags:fragment_contacts") |
| BooleanOptionKey const | frags::p_value_selection ("frags:p_value_selection") |
| IntegerOptionKey const | frags::n_frags ("frags:n_frags") |
| FileOptionKey const | frags::allowed_pdb ("frags:allowed_pdb") |
| StringVectorOptionKey const | frags::ss_pred ("frags:ss_pred") |
| FileOptionKey const | frags::spine_x ("frags:spine_x") |
| FileOptionKey const | frags::depth ("frags:depth") |
| FileOptionKey const | frags::denied_pdb ("frags:denied_pdb") |
| IntegerVectorOptionKey const | frags::frag_sizes ("frags:frag_sizes") |
| BooleanOptionKey const | frags::write_ca_coordinates ("frags:write_ca_coordinates") |
| BooleanOptionKey const | frags::write_scores ("frags:write_scores") |
| BooleanOptionKey const | frags::annotate ("frags:annotate") |
| IntegerOptionKey const | frags::nr_large_copies ("frags:nr_large_copies") |
| IntegerOptionKey const | frags::n_candidates ("frags:n_candidates") |
| BooleanOptionKey const | frags::write_rama_tables ("frags:write_rama_tables") |
| RealOptionKey const | frags::rama_C ("frags:rama_C") |
| RealOptionKey const | frags::rama_B ("frags:rama_B") |
| RealOptionKey const | frags::sigmoid_cs_A ("frags:sigmoid_cs_A") |
| RealOptionKey const | frags::sigmoid_cs_B ("frags:sigmoid_cs_B") |
| RealOptionKey const | frags::seqsim_H ("frags:seqsim_H") |
| RealOptionKey const | frags::seqsim_E ("frags:seqsim_E") |
| RealOptionKey const | frags::seqsim_L ("frags:seqsim_L") |
| RealOptionKey const | frags::rama_norm ("frags:rama_norm") |
| StringOptionKey const | frags::describe_fragments ("frags:describe_fragments") |
| RealOptionKey const | frags::picking_old_max_score ("frags:picking_old_max_score") |
| BooleanOptionKey const | frags::write_sequence_only ("frags:write_sequence_only") |
| BooleanOptionKey const | frags::output_silent ("frags:output_silent") |
| BooleanOptionKey const | frags::output_index ("frags:output_index") |
| BooleanOptionKey const | frags::score_output_silent ("frags:score_output_silent") |
| BooleanOptionKey const | frags::scoring::scoring ("frags:scoring") |
| FileOptionKey const | frags::scoring::config ("frags:scoring:config") |
| StringOptionKey const | frags::scoring::profile_score ("frags:scoring:profile_score") |
| BooleanOptionKey const | frags::picking::picking ("frags:picking") |
| StringOptionKey const | frags::picking::selecting_rule ("frags:picking:selecting_rule") |
| StringOptionKey const | frags::picking::selecting_scorefxn ("frags:picking:selecting_scorefxn") |
| FileOptionKey const | frags::picking::quota_config_file ("frags:picking:quota_config_file") |
| IntegerVectorOptionKey const | frags::picking::query_pos ("frags:picking:query_pos") |
| BooleanOptionKey const | frags::nonlocal::nonlocal ("frags:nonlocal") |
| BooleanOptionKey const | frags::nonlocal::relax_input ("frags:nonlocal:relax_input") |
| BooleanOptionKey const | frags::nonlocal::relax_input_with_coordinate_constraints ("frags:nonlocal:relax_input_with_coordinate_constraints") |
| IntegerOptionKey const | frags::nonlocal::relax_frags_repeats ("frags:nonlocal:relax_frags_repeats") |
| BooleanOptionKey const | frags::nonlocal::single_chain ("frags:nonlocal:single_chain") |
| RealOptionKey const | frags::nonlocal::min_contacts_per_res ("frags:nonlocal:min_contacts_per_res") |
| RealOptionKey const | frags::nonlocal::max_ddg_score ("frags:nonlocal:max_ddg_score") |
| RealOptionKey const | frags::nonlocal::max_rmsd_after_relax ("frags:nonlocal:max_rmsd_after_relax") |
| BooleanOptionKey const | frags::nonlocal::output_frags_pdbs ("frags:nonlocal:output_frags_pdbs") |
| BooleanOptionKey const | frags::nonlocal::output_idealized ("frags:nonlocal:output_idealized") |
| BooleanOptionKey const | frags::nonlocal::output_silent ("frags:nonlocal:output_silent") |
| BooleanOptionKey const | frags::contacts::contacts ("frags:contacts") |
| IntegerOptionKey const | frags::contacts::min_seq_sep ("frags:contacts:min_seq_sep") |
| RealVectorOptionKey const | frags::contacts::dist_cutoffs ("frags:contacts:dist_cutoffs") |
| RealOptionKey const | frags::contacts::centroid_distance_scale_factor ("frags:contacts:centroid_distance_scale_factor") |
| StringVectorOptionKey const | frags::contacts::type ("frags:contacts:type") |
| IntegerOptionKey const | frags::contacts::neighbors ("frags:contacts:neighbors") |
| BooleanOptionKey const | frags::contacts::output_all ("frags:contacts:output_all") |
| BooleanOptionKey const | frags::ABEGO::ABEGO ("frags:ABEGO") |
| RealOptionKey const | frags::ABEGO::phi_psi_range_A ("frags:ABEGO:phi_psi_range_A") |
| BooleanOptionKey const | helical_bundle_predict::helical_bundle_predict ("helical_bundle_predict") |
| StringOptionKey const | helical_bundle_predict::sequence_file ("helical_bundle_predict:sequence_file") |
| FileOptionKey const | helical_bundle_predict::helix_assignment_file ("helical_bundle_predict:helix_assignment_file") |
| FileOptionKey const | helical_bundle_predict::psipred_file ("helical_bundle_predict:psipred_file") |
| RealOptionKey const | helical_bundle_predict::psipred_alpha_helix_prob_cutoff ("helical_bundle_predict:psipred_alpha_helix_prob_cutoff") |
| RealOptionKey const | helical_bundle_predict::psipred_beta_strand_prob_cutoff ("helical_bundle_predict:psipred_beta_strand_prob_cutoff") |
| IntegerOptionKey const | helical_bundle_predict::num_simulated_annealing_rounds_centroid ("helical_bundle_predict:num_simulated_annealing_rounds_centroid") |
| IntegerOptionKey const | helical_bundle_predict::num_steps_per_simulated_annealing_round_centroid ("helical_bundle_predict:num_steps_per_simulated_annealing_round_centroid") |
| RealOptionKey const | helical_bundle_predict::centroid_max_temperature ("helical_bundle_predict:centroid_max_temperature") |
| RealOptionKey const | helical_bundle_predict::centroid_min_temperature ("helical_bundle_predict:centroid_min_temperature") |
| BooleanOptionKey const | helical_bundle_predict::do_final_fullatom_refinement ("helical_bundle_predict:do_final_fullatom_refinement") |
| IntegerOptionKey const | helical_bundle_predict::fast_relax_rounds ("helical_bundle_predict:fast_relax_rounds") |
| BooleanOptionKey const | helical_bundle_predict::find_disulfides ("helical_bundle_predict:find_disulfides") |
| IntegerVectorOptionKey const | helical_bundle_predict::ignore_native_residues_in_rmsd ("helical_bundle_predict:ignore_native_residues_in_rmsd") |
| IntegerVectorOptionKey const | helical_bundle_predict::ignore_prediction_residues_in_rmsd ("helical_bundle_predict:ignore_prediction_residues_in_rmsd") |
| BooleanOptionKey const | holes::holes ("holes") |
| FileOptionKey const | holes::dalphaball ("holes:dalphaball") |
| FileOptionKey const | holes::params ("holes:params") |
| IntegerOptionKey const | holes::h_mode ("holes:h_mode") |
| BooleanOptionKey const | holes::water ("holes:water") |
| BooleanOptionKey const | holes::make_pdb ("holes:make_pdb") |
| BooleanOptionKey const | holes::make_voids ("holes:make_voids") |
| BooleanOptionKey const | holes::atom_scores ("holes:atom_scores") |
| BooleanOptionKey const | holes::residue_scores ("holes:residue_scores") |
| StringOptionKey const | holes::minimize ("holes:minimize") |
| BooleanOptionKey const | holes::debug ("holes:debug") |
| BooleanOptionKey const | hotspot::hotspot ("hotspot") |
| BooleanOptionKey const | hotspot::allow_gly ("hotspot:allow_gly") |
| BooleanOptionKey const | hotspot::allow_proline ("hotspot:allow_proline") |
| BooleanOptionKey const | hotspot::benchmark ("hotspot:benchmark") |
| StringVectorOptionKey const | hotspot::residue ("hotspot:residue") |
| FileOptionKey const | hotspot::hashfile ("hotspot:hashfile") |
| FileOptionKey const | hotspot::target ("hotspot:target") |
| IntegerOptionKey const | hotspot::target_res ("hotspot:target_res") |
| RealOptionKey const | hotspot::target_dist ("hotspot:target_dist") |
| FileOptionKey const | hotspot::density ("hotspot:density") |
| FileOptionKey const | hotspot::weighted_density ("hotspot:weighted_density") |
| FileOptionKey const | hotspot::rms_target ("hotspot:rms_target") |
| FileOptionKey const | hotspot::rms_hotspot ("hotspot:rms_hotspot") |
| IntegerOptionKey const | hotspot::rms_hotspot_res ("hotspot:rms_hotspot_res") |
| BooleanOptionKey const | hotspot::rescore ("hotspot:rescore") |
| RealOptionKey const | hotspot::threshold ("hotspot:threshold") |
| BooleanOptionKey const | hotspot::sc_only ("hotspot:sc_only") |
| BooleanOptionKey const | hotspot::fxnal_group ("hotspot:fxnal_group") |
| BooleanOptionKey const | hotspot::cluster ("hotspot:cluster") |
| BooleanOptionKey const | hotspot::colonyE ("hotspot:colonyE") |
| IntegerOptionKey const | hotspot::length ("hotspot:length") |
| BooleanOptionKey const | hotspot::envhb ("hotspot:envhb") |
| RealOptionKey const | hotspot::angle ("hotspot:angle") |
| IntegerOptionKey const | hotspot::angle_res ("hotspot:angle_res") |
| IntegerOptionKey const | hotspot::batch_size ("hotspot:batch_size") |
| BooleanOptionKey const | indexed_structure_store::indexed_structure_store ("indexed_structure_store") |
| FileOptionKey const | indexed_structure_store::fragment_store ("indexed_structure_store:fragment_store") |
| RealOptionKey const | indexed_structure_store::fragment_threshold_distance ("indexed_structure_store:fragment_threshold_distance") |
| StringOptionKey const | indexed_structure_store::store_name ("indexed_structure_store:store_name") |
| StringOptionKey const | indexed_structure_store::exclude_homo ("indexed_structure_store:exclude_homo") |
| BooleanOptionKey const | lh::lh ("lh") |
| IntegerVectorOptionKey const | lh::loopsizes ("lh:loopsizes") |
| IntegerOptionKey const | lh::num_partitions ("lh:num_partitions") |
| PathOptionKey const | lh::db_path ("lh:db_path") |
| BooleanOptionKey const | lh::exclude_homo ("lh:exclude_homo") |
| BooleanOptionKey const | lh::bss ("lh:bss") |
| StringOptionKey const | lh::refstruct ("lh:refstruct") |
| StringOptionKey const | lh::homo_file ("lh:homo_file") |
| RealVectorOptionKey const | lh::createdb_rms_cutoff ("lh:createdb_rms_cutoff") |
| RealOptionKey const | lh::min_bbrms ("lh:min_bbrms") |
| RealOptionKey const | lh::max_bbrms ("lh:max_bbrms") |
| RealOptionKey const | lh::min_rms ("lh:min_rms") |
| RealOptionKey const | lh::max_rms ("lh:max_rms") |
| BooleanOptionKey const | lh::filter_by_phipsi ("lh:filter_by_phipsi") |
| IntegerOptionKey const | lh::max_radius ("lh:max_radius") |
| IntegerOptionKey const | lh::max_struct ("lh:max_struct") |
| IntegerOptionKey const | lh::max_struct_per_radius ("lh:max_struct_per_radius") |
| RealOptionKey const | lh::grid_space_multiplier ("lh:grid_space_multiplier") |
| RealOptionKey const | lh::grid_angle_multiplier ("lh:grid_angle_multiplier") |
| IntegerOptionKey const | lh::skim_size ("lh:skim_size") |
| IntegerOptionKey const | lh::rounds ("lh:rounds") |
| StringOptionKey const | lh::jobname ("lh:jobname") |
| IntegerOptionKey const | lh::max_lib_size ("lh:max_lib_size") |
| IntegerOptionKey const | lh::max_emperor_lib_size ("lh:max_emperor_lib_size") |
| IntegerOptionKey const | lh::max_emperor_lib_round ("lh:max_emperor_lib_round") |
| IntegerOptionKey const | lh::library_expiry_time ("lh:library_expiry_time") |
| StringOptionKey const | lh::objective_function ("lh:objective_function") |
| IntegerOptionKey const | lh::expire_after_rounds ("lh:expire_after_rounds") |
| StringOptionKey const | lh::mpi_resume ("lh:mpi_resume") |
| StringOptionKey const | lh::mpi_feedback ("lh:mpi_feedback") |
| IntegerOptionKey const | lh::mpi_batch_relax_chunks ("lh:mpi_batch_relax_chunks") |
| IntegerOptionKey const | lh::mpi_batch_relax_absolute_max ("lh:mpi_batch_relax_absolute_max") |
| IntegerOptionKey const | lh::mpi_outbound_wu_buffer_size ("lh:mpi_outbound_wu_buffer_size") |
| IntegerOptionKey const | lh::mpi_loophash_split_size ("lh:mpi_loophash_split_size ") |
| RealOptionKey const | lh::mpi_metropolis_temp ("lh:mpi_metropolis_temp") |
| IntegerOptionKey const | lh::mpi_save_state_interval ("lh:mpi_save_state_interval") |
| BooleanOptionKey const | lh::mpi_master_save_score_only ("lh:mpi_master_save_score_only") |
| IntegerOptionKey const | lh::max_loophash_per_structure ("lh:max_loophash_per_structure") |
| RealOptionKey const | lh::prob_terminus_ramapert ("lh:prob_terminus_ramapert") |
| RealOptionKey const | lh::rms_limit ("lh:rms_limit") |
| RealOptionKey const | lh::similarity_reference ("lh:similarity_reference") |
| BooleanOptionKey const | lh::centroid_only ("lh:centroid_only") |
| BooleanOptionKey const | lh::write_centroid_structs ("lh:write_centroid_structs") |
| BooleanOptionKey const | lh::write_all_fa_structs ("lh:write_all_fa_structs") |
| BooleanOptionKey const | lh::sandbox ("lh:sandbox") |
| BooleanOptionKey const | lh::create_db ("lh:create_db") |
| FileOptionKey const | lh::sample_weight_file ("lh:sample_weight_file") |
| RealOptionKey const | lh::radius_size ("lh:radius_size") |
| IntegerOptionKey const | lh::max_ref_lib_size ("lh:max_ref_lib_size") |
| StringVectorOptionKey const | lh::multi_objective_functions ("lh:multi_objective_functions") |
| StringVectorOptionKey const | lh::additional_objective_functions ("lh:additional_objective_functions") |
| RealOptionKey const | lh::edensity_weight_for_sampling ("lh:edensity_weight_for_sampling") |
| StringOptionKey const | lh::mpi_master_schfile ("lh:mpi_master_schfile") |
| IntegerVectorOptionKey const | lh::mpi_master_cpu_weight ("lh:mpi_master_cpu_weight") |
| StringOptionKey const | lh::mpi_loophash_scan_type ("lh:mpi_loophash_scan_type") |
| BooleanOptionKey const | lh::mpi_read_structure_for_emperor ("lh:mpi_read_structure_for_emperor") |
| BooleanOptionKey const | lh::mpi_packmin_init ("lh:mpi_packmin_init") |
| IntegerOptionKey const | lh::max_sample_per_structure ("lh:max_sample_per_structure") |
| StringOptionKey const | lh::loop_string ("lh:loop_string") |
| StringOptionKey const | lh::seg_string ("lh:seg_string") |
| StringVectorOptionKey const | lh::loopresdef ("lh:loopresdef") |
| BooleanOptionKey const | lh::pert_init_loop ("lh:pert_init_loop") |
| RealOptionKey const | lh::NMdist ("lh:NMdist") |
| RealVectorOptionKey const | lh::objective_dominate_cut ("lh:objective_dominate_cut") |
| RealVectorOptionKey const | lh::objective_cut_increment ("lh:objective_cut_increment") |
| StringOptionKey const | lh::similarity_method ("lh:similarity_method") |
| StringOptionKey const | lh::similarity_measure ("lh:similarity_measure") |
| RealOptionKey const | lh::similarity_tolerance ("lh:similarity_tolerance") |
| RealOptionKey const | lh::parent_selection_kT ("lh:parent_selection_kT") |
| StringOptionKey const | lh::sim_replace_obj ("lh:sim_replace_obj") |
| RealOptionKey const | lh::ulr_mulfactor ("lh:ulr_mulfactor") |
| BooleanOptionKey const | lh::filter_up_to_maxlib ("lh:filter_up_to_maxlib") |
| BooleanOptionKey const | lh::minimize_after_nmsearch ("lh:minimize_after_nmsearch") |
| BooleanOptionKey const | lh::fragpdb::fragpdb ("lh:fragpdb") |
| StringOptionKey const | lh::fragpdb::out_path ("lh:fragpdb:out_path") |
| IntegerVectorOptionKey const | lh::fragpdb::indexoffset ("lh:fragpdb:indexoffset") |
| StringVectorOptionKey const | lh::fragpdb::bin ("lh:fragpdb:bin") |
| BooleanOptionKey const | lh::symfragrm::symfragrm ("lh:symfragrm") |
| FileVectorOptionKey const | lh::symfragrm::pdblist ("lh:symfragrm:pdblist") |
| BooleanOptionKey const | loopfcst::loopfcst ("loopfcst") |
| RealOptionKey const | loopfcst::coord_cst_weight ("loopfcst:coord_cst_weight") |
| BooleanOptionKey const | loopfcst::coord_cst_all_atom ("loopfcst:coord_cst_all_atom") |
| BooleanOptionKey const | loopfcst::use_general_protocol ("loopfcst:use_general_protocol") |
| FileOptionKey const | loopfcst::coord_cst_weight_array ("loopfcst:coord_cst_weight_array") |
| FileOptionKey const | loopfcst::dump_coord_cst_weight_array ("loopfcst:dump_coord_cst_weight_array") |
| BooleanOptionKey const | LoopModel::LoopModel ("LoopModel") |
| FileOptionKey const | LoopModel::input_pdb ("LoopModel:input_pdb") |
| BooleanOptionKey const | make_rot_lib::make_rot_lib ("make_rot_lib") |
| FileOptionKey const | make_rot_lib::options_file ("make_rot_lib:options_file") |
| BooleanOptionKey const | make_rot_lib::output_logging ("make_rot_lib:output_logging") |
| IntegerVectorOptionKey const | make_rot_lib::two_fold_symmetry_135_315 ("make_rot_lib:two_fold_symmetry_135_315") |
| IntegerVectorOptionKey const | make_rot_lib::two_fold_symmetry_0_180 ("make_rot_lib:two_fold_symmetry_0_180") |
| IntegerVectorOptionKey const | make_rot_lib::three_fold_symmetry_90_210_330 ("make_rot_lib:three_fold_symmetry_90_210_330") |
| BooleanOptionKey const | make_rot_lib::use_terminal_residues ("make_rot_lib:use_terminal_residues") |
| BooleanOptionKey const | make_rot_lib::k_medoids ("make_rot_lib:k_medoids") |
| StringOptionKey const | make_rot_lib::patch_name_for_residue ("make_rot_lib:patch_name_for_residue") |
| FileOptionKey const | make_rot_lib::polymeric_context ("make_rot_lib:polymeric_context") |
| BooleanOptionKey const | make_mainchain_potential::make_mainchain_potential ("make_mainchain_potential") |
| BooleanOptionKey const | make_mainchain_potential::do_minimization ("make_mainchain_potential:do_minimization") |
| IntegerVectorOptionKey const | make_mainchain_potential::mainchain_potential_points_per_dimension ("make_mainchain_potential:mainchain_potential_points_per_dimension") |
| IntegerVectorOptionKey const | make_mainchain_potential::mainchain_torsions_covered ("make_mainchain_potential:mainchain_torsions_covered") |
| BooleanOptionKey const | make_mainchain_potential::make_pre_proline_potential ("make_mainchain_potential:make_pre_proline_potential") |
| FileOptionKey const | make_mainchain_potential::output_filename ("make_mainchain_potential:output_filename") |
| StringOptionKey const | make_mainchain_potential::residue_name ("make_mainchain_potential:residue_name") |
| BooleanOptionKey const | make_mainchain_potential::symmetrize_output ("make_mainchain_potential:symmetrize_output") |
| BooleanOptionKey const | make_mainchain_potential::write_potentials_for_individual_scoreterms ("make_mainchain_potential:write_potentials_for_individual_scoreterms") |
| BooleanOptionKey const | match::match ("match") |
| StringOptionKey const | match::lig_name ("match:lig_name") |
| RealOptionKey const | match::bump_tolerance ("match:bump_tolerance") |
| FileOptionKey const | match::active_site_definition_by_residue ("match:active_site_definition_by_residue") |
| FileOptionKey const | match::active_site_definition_by_gridlig ("match:active_site_definition_by_gridlig") |
| FileOptionKey const | match::required_active_site_atom_names ("match:required_active_site_atom_names") |
| FileOptionKey const | match::grid_boundary ("match:grid_boundary") |
| FileOptionKey const | match::geometric_constraint_file ("match:geometric_constraint_file") |
| FileOptionKey const | match::scaffold_active_site_residues ("match:scaffold_active_site_residues") |
| FileOptionKey const | match::scaffold_active_site_residues_for_geomcsts ("match:scaffold_active_site_residues_for_geomcsts") |
| RealOptionKey const | match::euclid_bin_size ("match:euclid_bin_size") |
| RealOptionKey const | match::euler_bin_size ("match:euler_bin_size") |
| BooleanOptionKey const | match::consolidate_matches ("match:consolidate_matches") |
| IntegerOptionKey const | match::output_matches_per_group ("match:output_matches_per_group") |
| StringVectorOptionKey const | match::orientation_atoms ("match:orientation_atoms") |
| StringOptionKey const | match::output_format ("match:output_format") |
| StringOptionKey const | match::match_grouper ("match:match_grouper") |
| RealOptionKey const | match::grouper_downstream_rmsd ("match:grouper_downstream_rmsd") |
| BooleanOptionKey const | match::output_matchres_only ("match:output_matchres_only") |
| IntegerVectorOptionKey const | match::geom_csts_downstream_output ("match:geom_csts_downstream_output") |
| BooleanOptionKey const | match::filter_colliding_upstream_residues ("match:filter_colliding_upstream_residues") |
| RealOptionKey const | match::upstream_residue_collision_tolerance ("match:upstream_residue_collision_tolerance") |
| RealOptionKey const | match::upstream_residue_collision_score_cutoff ("match:upstream_residue_collision_score_cutoff") |
| RealOptionKey const | match::upstream_residue_collision_Wfa_atr ("match:upstream_residue_collision_Wfa_atr") |
| RealOptionKey const | match::upstream_residue_collision_Wfa_rep ("match:upstream_residue_collision_Wfa_rep") |
| RealOptionKey const | match::upstream_residue_collision_Wfa_sol ("match:upstream_residue_collision_Wfa_sol") |
| BooleanOptionKey const | match::filter_upstream_downstream_collisions ("match:filter_upstream_downstream_collisions") |
| RealOptionKey const | match::updown_collision_tolerance ("match:updown_collision_tolerance") |
| RealOptionKey const | match::updown_residue_collision_score_cutoff ("match:updown_residue_collision_score_cutoff") |
| RealOptionKey const | match::updown_residue_collision_Wfa_atr ("match:updown_residue_collision_Wfa_atr") |
| RealOptionKey const | match::updown_residue_collision_Wfa_rep ("match:updown_residue_collision_Wfa_rep") |
| RealOptionKey const | match::updown_residue_collision_Wfa_sol ("match:updown_residue_collision_Wfa_sol") |
| BooleanOptionKey const | match::define_match_by_single_downstream_positioning ("match:define_match_by_single_downstream_positioning") |
| IntegerOptionKey const | match::ligand_rotamer_index ("match:ligand_rotamer_index") |
| BooleanOptionKey const | match::enumerate_ligand_rotamers ("match:enumerate_ligand_rotamers") |
| BooleanOptionKey const | match::only_enumerate_non_match_redundant_ligand_rotamers ("match:only_enumerate_non_match_redundant_ligand_rotamers") |
| BooleanOptionKey const | match::dynamic_grid_refinement ("match:dynamic_grid_refinement") |
| BooleanOptionKey const | match::build_round1_hits_twice ("match:build_round1_hits_twice") |
| BooleanOptionKey const | matdes::matdes ("matdes") |
| IntegerOptionKey const | matdes::num_subs_building_block ("matdes:num_subs_building_block") |
| IntegerOptionKey const | matdes::num_subs_total ("matdes:num_subs_total") |
| StringOptionKey const | matdes::pdbID ("matdes:pdbID") |
| StringOptionKey const | matdes::prefix ("matdes:prefix") |
| RealVectorOptionKey const | matdes::radial_disp ("matdes:radial_disp") |
| RealVectorOptionKey const | matdes::angle ("matdes:angle") |
| StringOptionKey const | matdes::tag ("matdes:tag") |
| BooleanOptionKey const | matdes::dock::dock ("matdes:dock") |
| RealOptionKey const | matdes::dock::neg_r ("matdes:dock:neg_r") |
| BooleanOptionKey const | matdes::dock::dump_pdb ("matdes:dock:dump_pdb") |
| BooleanOptionKey const | matdes::dock::dump_chainA_only ("matdes:dock:dump_chainA_only") |
| BooleanOptionKey const | matdes::design::design ("matdes:design") |
| RealOptionKey const | matdes::design::contact_dist ("matdes:design:contact_dist") |
| RealOptionKey const | matdes::design::grid_size_angle ("matdes:design:grid_size_angle") |
| RealOptionKey const | matdes::design::grid_size_radius ("matdes:design:grid_size_radius") |
| IntegerOptionKey const | matdes::design::grid_nsamp_angle ("matdes:design:grid_nsamp_angle") |
1.9.1