helical_bundle_predict Namespace Reference

Functions
BooleanOptionKey const	helical_bundle_predict ("helical_bundle_predict")
StringOptionKey const	sequence_file ("helical_bundle_predict:sequence_file")
FileOptionKey const	helix_assignment_file ("helical_bundle_predict:helix_assignment_file")
FileOptionKey const	psipred_file ("helical_bundle_predict:psipred_file")
RealOptionKey const	psipred_alpha_helix_prob_cutoff ("helical_bundle_predict:psipred_alpha_helix_prob_cutoff")
RealOptionKey const	psipred_beta_strand_prob_cutoff ("helical_bundle_predict:psipred_beta_strand_prob_cutoff")
IntegerOptionKey const	num_simulated_annealing_rounds_centroid ("helical_bundle_predict:num_simulated_annealing_rounds_centroid")
IntegerOptionKey const	num_steps_per_simulated_annealing_round_centroid ("helical_bundle_predict:num_steps_per_simulated_annealing_round_centroid")
RealOptionKey const	centroid_max_temperature ("helical_bundle_predict:centroid_max_temperature")
RealOptionKey const	centroid_min_temperature ("helical_bundle_predict:centroid_min_temperature")
BooleanOptionKey const	do_final_fullatom_refinement ("helical_bundle_predict:do_final_fullatom_refinement")
IntegerOptionKey const	fast_relax_rounds ("helical_bundle_predict:fast_relax_rounds")
BooleanOptionKey const	find_disulfides ("helical_bundle_predict:find_disulfides")
IntegerVectorOptionKey const	ignore_native_residues_in_rmsd ("helical_bundle_predict:ignore_native_residues_in_rmsd")
IntegerVectorOptionKey const	ignore_prediction_residues_in_rmsd ("helical_bundle_predict:ignore_prediction_residues_in_rmsd")

Function Documentation

centroid_max_temperature()

RealOptionKey const helical_bundle_predict::centroid_max_temperature

(

"helical_bundle_predict:centroid_max_temperature"

)

centroid_min_temperature()

RealOptionKey const helical_bundle_predict::centroid_min_temperature

(

"helical_bundle_predict:centroid_min_temperature"

)

do_final_fullatom_refinement()

BooleanOptionKey const helical_bundle_predict::do_final_fullatom_refinement

(

"helical_bundle_predict:do_final_fullatom_refinement"

)

fast_relax_rounds()

IntegerOptionKey const helical_bundle_predict::fast_relax_rounds

(

"helical_bundle_predict:fast_relax_rounds"

)

find_disulfides()

BooleanOptionKey const helical_bundle_predict::find_disulfides

(

"helical_bundle_predict:find_disulfides"

)

helical_bundle_predict()

BooleanOptionKey const helical_bundle_predict::helical_bundle_predict

(

"helical_bundle_predict"

)

helix_assignment_file()

FileOptionKey const helical_bundle_predict::helix_assignment_file

(

"helical_bundle_predict:helix_assignment_file"

)

ignore_native_residues_in_rmsd()

IntegerVectorOptionKey const helical_bundle_predict::ignore_native_residues_in_rmsd

(

"helical_bundle_predict:ignore_native_residues_in_rmsd"

)

ignore_prediction_residues_in_rmsd()

IntegerVectorOptionKey const helical_bundle_predict::ignore_prediction_residues_in_rmsd

(

"helical_bundle_predict:ignore_prediction_residues_in_rmsd"

)

num_simulated_annealing_rounds_centroid()

IntegerOptionKey const helical_bundle_predict::num_simulated_annealing_rounds_centroid

(

"helical_bundle_predict:num_simulated_annealing_rounds_centroid"

)

num_steps_per_simulated_annealing_round_centroid()

IntegerOptionKey const helical_bundle_predict::num_steps_per_simulated_annealing_round_centroid

(

"helical_bundle_predict:num_steps_per_simulated_annealing_round_centroid"

)

psipred_alpha_helix_prob_cutoff()

RealOptionKey const helical_bundle_predict::psipred_alpha_helix_prob_cutoff

(

"helical_bundle_predict:psipred_alpha_helix_prob_cutoff"

)

psipred_beta_strand_prob_cutoff()

RealOptionKey const helical_bundle_predict::psipred_beta_strand_prob_cutoff

(

"helical_bundle_predict:psipred_beta_strand_prob_cutoff"

)

psipred_file()

FileOptionKey const helical_bundle_predict::psipred_file

(

"helical_bundle_predict:psipred_file"

)

sequence_file()

StringOptionKey const helical_bundle_predict::sequence_file

(

"helical_bundle_predict:sequence_file"

)