|
Rosetta
|
Namespaces | |
| out | |
| out::path | |
| run | |
| run::PyMOLMover | |
| parser | |
| jd3 | |
| jd2 | |
| view | |
| score | |
Functions | |
| PathOptionKey const | out::path::mmtf ("out:path:mmtf") |
| BooleanOptionKey const | run::run ("run") |
| FileVectorOptionKey const | run::batches ("run:batches") |
| BooleanOptionKey const | run::no_prof_info_in_silentout ("run:no_prof_info_in_silentout") |
| BooleanOptionKey const | run::archive ("run:archive") |
| IntegerOptionKey const | run::n_replica ("run:n_replica") |
| BooleanOptionKey const | run::shuffle ("run:shuffle") |
| IntegerOptionKey const | run::n_cycles ("run:n_cycles") |
| IntegerOptionKey const | run::repeat ("run:repeat") |
| IntegerOptionKey const | run::max_min_iter ("run:max_min_iter") |
| IntegerOptionKey const | run::maxruntime ("run:maxruntime") |
| RealOptionKey const | run::maxruntime_bufferfactor ("run:maxruntime_bufferfactor") |
| BooleanOptionKey const | run::write_failures ("run:write_failures") |
| BooleanOptionKey const | run::benchmark ("run:benchmark") |
| BooleanOptionKey const | run::test_cycles ("run:test_cycles") |
| BooleanOptionKey const | run::memory_test_cycles ("run:memory_test_cycles") |
| BooleanOptionKey const | run::dry_run ("run:dry_run") |
| BooleanOptionKey const | run::debug ("run:debug") |
| BooleanOptionKey const | run::profile ("run:profile") |
| IntegerOptionKey const | run::max_retry_job ("run:max_retry_job") |
| BooleanOptionKey const | run::version ("run:version") |
| BooleanOptionKey const | run::nodelay ("run:nodelay") |
| IntegerOptionKey const | run::delay ("run:delay") |
| IntegerOptionKey const | run::random_delay ("run:random_delay") |
| BooleanOptionKey const | run::timer ("run:timer") |
| StringOptionKey const | run::chain ("run:chain") |
| BooleanOptionKey const | run::score_only ("run:score_only") |
| BooleanOptionKey const | run::decoystats ("run:decoystats") |
| BooleanOptionKey const | run::output_hbond_info ("run:output_hbond_info") |
| RealOptionKey const | run::wide_nblist_extension ("run:wide_nblist_extension") |
| BooleanOptionKey const | run::constant_seed ("run:constant_seed") |
| IntegerOptionKey const | run::jran ("run:jran") |
| BooleanOptionKey const | run::use_time_as_seed ("run:use_time_as_seed") |
| StringOptionKey const | run::rng_seed_device ("run:rng_seed_device") |
| IntegerOptionKey const | run::seed_offset ("run:seed_offset") |
| StringOptionKey const | run::rng ("run:rng") |
| BooleanOptionKey const | run::rebuild_disulf ("run:rebuild_disulf") |
| BooleanOptionKey const | run::preserve_header ("run:preserve_header") |
| BooleanOptionKey const | run::suppress_checkpoints ("run:suppress_checkpoints") |
| BooleanOptionKey const | run::checkpoint ("run:checkpoint") |
| BooleanOptionKey const | run::delete_checkpoints ("run:delete_checkpoints") |
| IntegerOptionKey const | run::checkpoint_interval ("run:checkpoint_interval") |
| StringOptionKey const | run::protocol ("run:protocol") |
| BooleanOptionKey const | run::remove_ss_length_screen ("run:remove_ss_length_screen") |
| StringOptionKey const | run::min_type ("run:min_type") |
| RealOptionKey const | run::min_tolerance ("run:min_tolerance") |
| BooleanOptionKey const | run::nblist_autoupdate ("run:nblist_autoupdate") |
| RealOptionKey const | run::nblist_autoupdate_narrow ("run:nblist_autoupdate_narrow") |
| RealOptionKey const | run::nblist_autoupdate_wide ("run:nblist_autoupdate_wide") |
| BooleanOptionKey const | run::skip_set_reasonable_fold_tree ("run:skip_set_reasonable_fold_tree") |
| BooleanOptionKey const | run::randomize_missing_coords ("run:randomize_missing_coords") |
| BooleanOptionKey const | run::ignore_zero_occupancy ("run:ignore_zero_occupancy") |
| IntegerOptionKey const | run::cycles_outer ("run:cycles_outer") |
| IntegerOptionKey const | run::cycles_inner ("run:cycles_inner") |
| IntegerOptionKey const | run::repack_rate ("run:repack_rate") |
| BooleanOptionKey const | run::reinitialize_mover_for_each_job ("run:reinitialize_mover_for_each_job") |
| BooleanOptionKey const | run::reinitialize_mover_for_new_input ("run:reinitialize_mover_for_new_input") |
| BooleanOptionKey const | run::multiple_processes_writing_to_one_directory ("run:multiple_processes_writing_to_one_directory") |
| StringOptionKey const | run::jobdist_miscfile_ext ("run:jobdist_miscfile_ext") |
| BooleanOptionKey const | run::no_scorefile ("run:no_scorefile") |
| BooleanOptionKey const | run::other_pose_to_scorefile ("run:other_pose_to_scorefile") |
| FileOptionKey const | run::other_pose_scorefile ("run:other_pose_scorefile") |
| BooleanOptionKey const | run::intermediate_scorefiles ("run:intermediate_scorefiles") |
| BooleanOptionKey const | run::intermediate_structures ("run:intermediate_structures") |
| BooleanOptionKey const | run::idealize_before_protocol ("run:idealize_before_protocol") |
| BooleanOptionKey const | run::interactive ("run:interactive") |
| BooleanOptionKey const | run::nosignal ("run:nosignal") |
| BooleanOptionKey const | run::crash_to_console ("run:crash_to_console") |
| BooleanOptionKey const | run::condor ("run:condor") |
| IntegerOptionKey const | run::nproc ("run:nproc") |
| IntegerOptionKey const | run::proc_id ("run:proc_id") |
| BooleanOptionKey const | run::exit_if_missing_heavy_atoms ("run:exit_if_missing_heavy_atoms") |
| RealOptionKey const | run::show_simulation_in_pymol ("run:show_simulation_in_pymol") |
| BooleanOptionKey const | run::update_pymol_on_energy_changes_only ("run:update_pymol_on_energy_changes_only") |
| BooleanOptionKey const | run::update_pymol_on_conformation_changes_only ("run:update_pymol_on_conformation_changes_only") |
| BooleanOptionKey const | run::keep_pymol_simulation_history ("run:keep_pymol_simulation_history") |
| BooleanOptionKey const | run::PyMOLMover::PyMOLMover ("run:PyMOLMover") |
| StringOptionKey const | run::PyMOLMover::address ("run:PyMOLMover:address") |
| IntegerOptionKey const | run::PyMOLMover::port ("run:PyMOLMover:port") |
| IntegerOptionKey const | run::PyMOLMover::max_packet_size ("run:PyMOLMover:max_packet_size") |
| BooleanOptionKey const | parser::parser ("parser") |
| StringOptionKey const | parser::protocol ("parser:protocol") |
| StringVectorOptionKey const | parser::script_vars ("parser:script_vars") |
| BooleanOptionKey const | parser::view ("parser:view") |
| StringVectorOptionKey const | parser::info ("parser:info") |
| StringOptionKey const | parser::output_schema ("parser:output_schema") |
| BooleanOptionKey const | parser::validate_and_exit ("parser:validate_and_exit") |
| BooleanOptionKey const | parser::never_rerun_filters ("parser:never_rerun_filters") |
| StringOptionKey const | parser::patchdock ("parser:patchdock") |
| IntegerVectorOptionKey const | parser::patchdock_random_entry ("parser:patchdock_random_entry") |
| IntegerOptionKey const | parser::inclusion_recursion_limit ("parser:inclusion_recursion_limit") |
| BooleanOptionKey const | jd3::jd3 ("jd3") |
| BooleanOptionKey const | jd3::mpi_work_partition_job_distributor ("jd3:mpi_work_partition_job_distributor") |
| FileOptionKey const | jd3::job_definition_schema ("jd3:job_definition_schema") |
| BooleanOptionKey const | jd3::mpi_fast_nonblocking_output ("jd3:mpi_fast_nonblocking_output") |
| IntegerOptionKey const | jd3::n_archive_nodes ("jd3:n_archive_nodes") |
| BooleanOptionKey const | jd3::do_not_archive_on_node0 ("jd3:do_not_archive_on_node0") |
| RealOptionKey const | jd3::mpi_fraction_outputters ("jd3:mpi_fraction_outputters") |
| IntegerOptionKey const | jd3::nthreads ("jd3:nthreads") |
| StringOptionKey const | jd3::archive_on_disk ("jd3:archive_on_disk") |
| BooleanOptionKey const | jd3::compress_job_results ("jd3:compress_job_results") |
| FileVectorOptionKey const | jd3::resource_definition_files ("jd3:resource_definition_files") |
| FileOptionKey const | jd3::resource_definition_schema ("jd3:resource_definition_schema") |
| BooleanOptionKey const | jd3::load_input_poses_only_once ("jd3:load_input_poses_only_once") |
| BooleanOptionKey const | jd3::checkpoint ("jd3:checkpoint") |
| IntegerOptionKey const | jd3::checkpoint_period ("jd3:checkpoint_period") |
| StringOptionKey const | jd3::checkpoint_directory ("jd3:checkpoint_directory") |
| BooleanOptionKey const | jd3::restore_from_checkpoint ("jd3:restore_from_checkpoint") |
| BooleanOptionKey const | jd3::continue_past_failed_checkpoint_restoration ("jd3:continue_past_failed_checkpoint_restoration") |
| BooleanOptionKey const | jd3::keep_all_checkpoints ("jd3:keep_all_checkpoints") |
| IntegerOptionKey const | jd3::keep_checkpoint ("jd3:keep_checkpoint") |
| StringVectorOptionKey const | jd3::job_definition_script_vars ("jd3:job_definition_script_vars") |
| BooleanOptionKey const | jd2::jd2 ("jd2") |
| BooleanOptionKey const | jd2::pose_input_stream ("jd2:pose_input_stream") |
| BooleanOptionKey const | jd2::lazy_silent_file_reader ("jd2:lazy_silent_file_reader") |
| BooleanOptionKey const | jd2::mpi_nowait_for_remaining_jobs ("jd2:mpi_nowait_for_remaining_jobs") |
| RealOptionKey const | jd2::mpi_timeout_factor ("jd2:mpi_timeout_factor") |
| BooleanOptionKey const | jd2::mpi_work_partition_job_distributor ("jd2:mpi_work_partition_job_distributor") |
| BooleanOptionKey const | jd2::mpi_file_buf_job_distributor ("jd2:mpi_file_buf_job_distributor") |
| BooleanOptionKey const | jd2::mpi_filebuf_jobdistributor ("jd2:mpi_filebuf_jobdistributor") |
| BooleanOptionKey const | jd2::mpi_fast_nonblocking_output ("jd2:mpi_fast_nonblocking_output") |
| BooleanOptionKey const | jd2::input_empty_pose ("jd2:input_empty_pose") |
| BooleanOptionKey const | jd2::dd_parser ("jd2:dd_parser") |
| IntegerOptionKey const | jd2::ntrials ("jd2:ntrials") |
| StringOptionKey const | jd2::generic_job_name ("jd2:generic_job_name") |
| BooleanOptionKey const | jd2::no_output ("jd2:no_output") |
| BooleanOptionKey const | jd2::enzdes_out ("jd2:enzdes_out") |
| IntegerOptionKey const | jd2::buffer_silent_output ("jd2:buffer_silent_output") |
| RealOptionKey const | jd2::buffer_flush_frequency ("jd2:buffer_flush_frequency") |
| BooleanOptionKey const | jd2::delete_old_poses ("jd2:delete_old_poses") |
| FileOptionKey const | jd2::checkpoint_file ("jd2:checkpoint_file") |
| BooleanOptionKey const | jd2::failed_job_exception ("jd2:failed_job_exception") |
| IntegerOptionKey const | jd2::max_nstruct_in_memory ("jd2:max_nstruct_in_memory") |
| BooleanOptionKey const | jd2::sequential_mpi_job_distribution ("jd2:sequential_mpi_job_distribution") |
| BooleanOptionKey const | jd2::grid_ensemble ("jd2:grid_ensemble") |
| BooleanOptionKey const | jd2::seed_ensemble ("jd2:seed_ensemble") |
| RealVectorOptionKey const | jd2::seed_ensemble_weights ("jd2:seed_ensemble_weights") |
| FileOptionKey const | jd2::seed_ensemble_weights_file ("jd2:seed_ensemble_weights_file") |
| BooleanOptionKey const | jd2::HOSTNAME_in_jobname ("jd2:HOSTNAME_in_jobname") |
| BooleanOptionKey const | jd2::parse_script_once_only ("jd2:parse_script_once_only") |
| BooleanOptionKey const | view::view ("view") |
| BooleanOptionKey const | view::show_virtual_residues ("view:show_virtual_residues") |
| BooleanOptionKey const | view::single_glycan_color ("view:single_glycan_color") |
| BooleanOptionKey const | score::score_pose_cutpoint_variants ("score:score_pose_cutpoint_variants") |
| BooleanOptionKey const | score::score ("score") |
| StringOptionKey const | score::lowres_weights ("score:lowres_weights") |
| StringOptionKey const | score::weights ("score:weights") |
| StringVectorOptionKey const | score::set_weights ("score:set_weights") |
| StringOptionKey const | score::pack_weights ("score:pack_weights") |
| StringOptionKey const | score::soft_wts ("score:soft_wts") |
| BooleanOptionKey const | score::docking_interface_score ("score:docking_interface_score") |
| RealOptionKey const | score::min_score_score ("score:min_score_score") |
| StringOptionKey const | score::custom_atom_pair ("score:custom_atom_pair") |
| FileVectorOptionKey const | score::patch ("score:patch") |
| BooleanOptionKey const | score::empty ("score:empty") |
| RealOptionKey const | score::fa_max_dis ("score:fa_max_dis") |
| BooleanOptionKey const | score::fa_Hatr ("score:fa_Hatr") |
| BooleanOptionKey const | score::no_smooth_etables ("score:no_smooth_etables") |
| BooleanOptionKey const | score::count_pair_hybrid ("score:count_pair_hybrid") |
| BooleanOptionKey const | score::count_pair_full ("score:count_pair_full") |
| BooleanOptionKey const | score::no_lk_polar_desolvation ("score:no_lk_polar_desolvation") |
| BooleanOptionKey const | score::lk_polar_without_proline_N ("score:lk_polar_without_proline_N") |
| StringOptionKey const | score::input_etables ("score:input_etables") |
| StringOptionKey const | score::output_etables ("score:output_etables") |
| BooleanOptionKey const | score::analytic_etable_evaluation ("score:analytic_etable_evaluation") |
| BooleanOptionKey const | score::put_intra_into_total ("score:put_intra_into_total") |
| BooleanOptionKey const | score::include_intra_res_protein ("score:include_intra_res_protein") |
| BooleanOptionKey const | score::fa_stack_base_base_only ("score:fa_stack_base_base_only") |
| BooleanOptionKey const | score::fa_stack_include_rna_protein ("score:fa_stack_include_rna_protein") |
| RealOptionKey const | score::fa_stack_sol_prefactor ("score:fa_stack_sol_prefactor") |
| RealOptionKey const | score::fa_stack_sol_stack_cutoff ("score:fa_stack_sol_stack_cutoff") |
| RealOptionKey const | score::fa_stack_sol_dist_cutoff ("score:fa_stack_sol_dist_cutoff") |
| RealOptionKey const | score::fa_stack_lr_prefactor ("score:fa_stack_lr_prefactor") |
| RealOptionKey const | score::fa_stack_lr_stack_cutoff ("score:fa_stack_lr_stack_cutoff") |
| RealOptionKey const | score::fa_stack_lr_dist_cutoff ("score:fa_stack_lr_dist_cutoff") |
| IntegerOptionKey const | score::geom_sol_interres_path_distance_cutoff ("score:geom_sol_interres_path_distance_cutoff") |
| IntegerOptionKey const | score::geom_sol_intrares_path_distance_cutoff ("score:geom_sol_intrares_path_distance_cutoff") |
| RealOptionKey const | score::rms_target ("score:rms_target") |
| BooleanOptionKey const | score::ramaneighbors ("score:ramaneighbors") |
| StringOptionKey const | score::optH_weights ("score:optH_weights") |
| StringOptionKey const | score::optH_patch ("score:optH_patch") |
| StringVectorOptionKey const | score::hb_don_strength ("score:hb_don_strength") |
| StringVectorOptionKey const | score::hb_acc_strength ("score:hb_acc_strength") |
| StringOptionKey const | score::hbe_for_dH2O_aGEN_SP3SC_ssother ("score:hbe_for_dH2O_aGEN_SP3SC_ssother") |
| RealOptionKey const | score::hb_max_energy ("score:hb_max_energy") |
| StringOptionKey const | score::hbond_params ("score:hbond_params") |
| BooleanOptionKey const | score::hbond_bb_per_residue_energy ("score:hbond_bb_per_residue_energy") |
| BooleanOptionKey const | score::hbond_disable_bbsc_exclusion_rule ("score:hbond_disable_bbsc_exclusion_rule") |
| BooleanOptionKey const | score::use_hb_env_dep ("score:use_hb_env_dep") |
| BooleanOptionKey const | score::water_hybrid_sf ("score:water_hybrid_sf") |
| BooleanOptionKey const | score::show_etable_contributions ("score:show_etable_contributions") |
| IntegerOptionKey const | score::symE_units ("score:symE_units") |
| RealOptionKey const | score::symE_bonus ("score:symE_bonus") |
| BooleanOptionKey const | score::symmetric_gly_tables ("score:symmetric_gly_tables") |
| RealOptionKey const | score::NV_lbound ("score:NV_lbound") |
| RealOptionKey const | score::NV_ubound ("score:NV_ubound") |
| StringOptionKey const | score::NV_table ("score:NV_table") |
| BooleanOptionKey const | score::find_neighbors_3dgrid ("score:find_neighbors_3dgrid") |
| BooleanOptionKey const | score::find_neighbors_stripehash ("score:find_neighbors_stripehash") |
| StringOptionKey const | score::seqdep_refene_fname ("score:seqdep_refene_fname") |
| StringOptionKey const | score::secondary_seqdep_refene_fname ("score:secondary_seqdep_refene_fname") |
| BooleanOptionKey const | score::exact_occ_pairwise ("score:exact_occ_pairwise") |
| BooleanOptionKey const | score::exact_occ_skip_Hbonders ("score:exact_occ_skip_Hbonders") |
| BooleanOptionKey const | score::exact_occ_pairwise_by_res ("score:exact_occ_pairwise_by_res") |
| BooleanOptionKey const | score::exact_occ_split_between_res ("score:exact_occ_split_between_res") |
| BooleanOptionKey const | score::exact_occ_self_res_no_occ ("score:exact_occ_self_res_no_occ") |
| RealOptionKey const | score::exact_occ_radius_scaling ("score:exact_occ_radius_scaling") |
| StringVectorOptionKey const | score::ref_offsets ("score:ref_offsets") |
| RealOptionKey const | score::ref_offset ("score:ref_offset") |
| BooleanOptionKey const | score::output_residue_energies ("score:output_residue_energies") |
| StringOptionKey const | score::fa_custom_pair_distance_file ("score:fa_custom_pair_distance_file") |
| RealOptionKey const | score::disulf_matching_probe ("score:disulf_matching_probe") |
| RealVectorOptionKey const | score::bonded_params ("score:bonded_params") |
| StringOptionKey const | score::bonded_params_dir ("score:bonded_params_dir") |
| StringVectorOptionKey const | score::extra_mm_params_dir ("score:extra_mm_params_dir") |
| StringOptionKey const | score::gen_bonded_params_file ("score:gen_bonded_params_file") |
| StringOptionKey const | score::torsion_distr_params_file ("score:torsion_distr_params_file") |
| StringOptionKey const | score::gen_bonded_exclude_def_file ("score:gen_bonded_exclude_def_file") |
| BooleanOptionKey const | score::genbonded_score_full ("score:genbonded_score_full") |
| BooleanOptionKey const | score::genbonded_score_hybrid ("score:genbonded_score_hybrid") |
| StringOptionKey const | score::extra_improper_file ("score:extra_improper_file") |
| BooleanOptionKey const | score::cart_bonded_skip_cutpoints ("score:cart_bonded_skip_cutpoints") |
| RealOptionKey const | score::pro_close_planar_constraint ("score:pro_close_planar_constraint") |
| BooleanOptionKey const | score::no_pro_close_ring_closure ("score:no_pro_close_ring_closure") |
| RealOptionKey const | score::ring_close_shadow_constraint ("score:ring_close_shadow_constraint") |
| BooleanOptionKey const | score::linear_bonded_potential ("score:linear_bonded_potential") |
| RealOptionKey const | score::free_side_chain_bonus ("score:free_side_chain_bonus") |
| BooleanOptionKey const | score::compute_mg_sol_for_hydrogens ("score:compute_mg_sol_for_hydrogens") |
| IntegerVectorOptionKey const | score::rg_local_span ("score:rg_local_span") |
| BooleanOptionKey const | score::unmodifypot ("score:unmodifypot") |
| RealOptionKey const | score::conc ("score:conc") |
| IntegerVectorOptionKey const | score::sidechain_buried ("score:sidechain_buried") |
| IntegerVectorOptionKey const | score::sidechain_exposed ("score:sidechain_exposed") |
| StringVectorOptionKey const | score::aa_composition_setup_file ("score:aa_composition_setup_file") |
| StringOptionKey const | score::aa_repeat_energy_penalty_file ("score:aa_repeat_energy_penalty_file") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_hbond_energy_threshold ("score:approximate_buried_unsat_penalty_hbond_energy_threshold") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_burial_atomic_depth ("score:approximate_buried_unsat_penalty_burial_atomic_depth") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_burial_probe_radius ("score:approximate_buried_unsat_penalty_burial_probe_radius") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_burial_resolution ("score:approximate_buried_unsat_penalty_burial_resolution") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_oversat_penalty ("score:approximate_buried_unsat_penalty_oversat_penalty") |
| BooleanOptionKey const | score::approximate_buried_unsat_penalty_assume_const_backbone ("score:approximate_buried_unsat_penalty_assume_const_backbone") |
| BooleanOptionKey const | score::approximate_buried_unsat_penalty_natural_corrections1 ("score:approximate_buried_unsat_penalty_natural_corrections1") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_hbond_bonus_cross_chain ("score:approximate_buried_unsat_penalty_hbond_bonus_cross_chain") |
| RealOptionKey const | score::approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb ("score:approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb") |
| BooleanOptionKey const | score::approximate_buried_unsat_penalty_lys_ok_with_1 ("score:approximate_buried_unsat_penalty_lys_ok_with_1") |
| StringOptionKey const | score::target_clash_pdb ("score:target_clash_pdb") |
| RealOptionKey const | score::aspartimide_penalty_value ("score:aspartimide_penalty_value") |
| RealOptionKey const | score::buried_unsatisfied_penalty_cone_angle_exponent ("score:buried_unsatisfied_penalty_cone_angle_exponent") |
| RealOptionKey const | score::buried_unsatisfied_penalty_cone_angle_shift_factor ("score:buried_unsatisfied_penalty_cone_angle_shift_factor") |
| RealOptionKey const | score::buried_unsatisfied_penalty_cone_dist_exponent ("score:buried_unsatisfied_penalty_cone_dist_exponent") |
| RealOptionKey const | score::buried_unsatisfied_penalty_cone_dist_midpoint ("score:buried_unsatisfied_penalty_cone_dist_midpoint") |
| RealOptionKey const | score::buried_unsatisfied_penalty_burial_threshold ("score:buried_unsatisfied_penalty_burial_threshold") |
| RealOptionKey const | score::buried_unsatisfied_penalty_hbond_energy_threshold ("score:buried_unsatisfied_penalty_hbond_energy_threshold") |
| FileOptionKey const | score::covalent_labeling_input ("score:covalent_labeling_input") |
| FileOptionKey const | score::hrf_dynamics_input ("score:hrf_dynamics_input") |
| FileOptionKey const | score::covalent_labeling_fa_input ("score:covalent_labeling_fa_input") |
| FileOptionKey const | score::depc_ms_input ("score:depc_ms_input") |
| RealOptionKey const | score::elec_min_dis ("score:elec_min_dis") |
| RealOptionKey const | score::elec_max_dis ("score:elec_max_dis") |
| RealOptionKey const | score::elec_die ("score:elec_die") |
| BooleanOptionKey const | score::elec_r_option ("score:elec_r_option") |
| BooleanOptionKey const | score::elec_sigmoidal_die ("score:elec_sigmoidal_die") |
| RealOptionKey const | score::elec_sigmoidal_die_D ("score:elec_sigmoidal_die_D") |
| RealOptionKey const | score::elec_sigmoidal_die_D0 ("score:elec_sigmoidal_die_D0") |
| RealOptionKey const | score::elec_sigmoidal_die_S ("score:elec_sigmoidal_die_S") |
| BooleanOptionKey const | score::stack_elec_sigmoidal_die ("score:stack_elec_sigmoidal_die") |
| BooleanOptionKey const | score::elec_representative_cp ("score:elec_representative_cp") |
| BooleanOptionKey const | score::elec_representative_cp_flip ("score:elec_representative_cp_flip") |
| BooleanOptionKey const | score::eval_intrares_elec_ST_only ("score:eval_intrares_elec_ST_only") |
| BooleanOptionKey const | score::smooth_fa_elec ("score:smooth_fa_elec") |
| StringOptionKey const | score::grpelec_fade_type ("score:grpelec_fade_type") |
| RealOptionKey const | score::grpelec_fade_param1 ("score:grpelec_fade_param1") |
| RealOptionKey const | score::grpelec_fade_param2 ("score:grpelec_fade_param2") |
| StringOptionKey const | score::elec_group_file ("score:elec_group_file") |
| StringOptionKey const | score::elec_group_extrafile ("score:elec_group_extrafile") |
| BooleanOptionKey const | score::grpelec_fade_hbond ("score:grpelec_fade_hbond") |
| RealVectorOptionKey const | score::grpelec_max_qeps ("score:grpelec_max_qeps") |
| BooleanOptionKey const | score::grpelec_context_dependent ("score:grpelec_context_dependent") |
| BooleanOptionKey const | score::grp_cpfxn ("score:grp_cpfxn") |
| RealVectorOptionKey const | score::grpelec_cpfxn_weight ("score:grpelec_cpfxn_weight") |
| StringOptionKey const | score::hbnet_bonus_function_ramping ("score:hbnet_bonus_function_ramping") |
| IntegerOptionKey const | score::hbnet_max_network_size ("score:hbnet_max_network_size") |
| RealOptionKey const | score::elec_context_minstrength ("score:elec_context_minstrength") |
| RealOptionKey const | score::elec_context_minburial ("score:elec_context_minburial") |
| RealOptionKey const | score::elec_context_maxburial ("score:elec_context_maxburial") |
| BooleanOptionKey const | score::use_polarization ("score:use_polarization") |
| BooleanOptionKey const | score::use_gen_kirkwood ("score:use_gen_kirkwood") |
| RealOptionKey const | score::protein_dielectric ("score:protein_dielectric") |
| RealOptionKey const | score::water_dielectric ("score:water_dielectric") |
| RealOptionKey const | score::facts_GBpair_cut ("score:facts_GBpair_cut") |
| RealOptionKey const | score::facts_kappa ("score:facts_kappa") |
| IntegerOptionKey const | score::facts_asp_patch ("score:facts_asp_patch") |
| BooleanOptionKey const | score::facts_plane_to_self ("score:facts_plane_to_self") |
1.9.1