jd2 Namespace Reference

Functions
BooleanOptionKey const	jd2 ("jd2")
BooleanOptionKey const	pose_input_stream ("jd2:pose_input_stream")
BooleanOptionKey const	lazy_silent_file_reader ("jd2:lazy_silent_file_reader")
BooleanOptionKey const	mpi_nowait_for_remaining_jobs ("jd2:mpi_nowait_for_remaining_jobs")
RealOptionKey const	mpi_timeout_factor ("jd2:mpi_timeout_factor")
BooleanOptionKey const	mpi_work_partition_job_distributor ("jd2:mpi_work_partition_job_distributor")
BooleanOptionKey const	mpi_file_buf_job_distributor ("jd2:mpi_file_buf_job_distributor")
BooleanOptionKey const	mpi_filebuf_jobdistributor ("jd2:mpi_filebuf_jobdistributor")
BooleanOptionKey const	mpi_fast_nonblocking_output ("jd2:mpi_fast_nonblocking_output")
BooleanOptionKey const	input_empty_pose ("jd2:input_empty_pose")
BooleanOptionKey const	dd_parser ("jd2:dd_parser")
IntegerOptionKey const	ntrials ("jd2:ntrials")
StringOptionKey const	generic_job_name ("jd2:generic_job_name")
BooleanOptionKey const	no_output ("jd2:no_output")
BooleanOptionKey const	enzdes_out ("jd2:enzdes_out")
IntegerOptionKey const	buffer_silent_output ("jd2:buffer_silent_output")
RealOptionKey const	buffer_flush_frequency ("jd2:buffer_flush_frequency")
BooleanOptionKey const	delete_old_poses ("jd2:delete_old_poses")
FileOptionKey const	checkpoint_file ("jd2:checkpoint_file")
BooleanOptionKey const	failed_job_exception ("jd2:failed_job_exception")
IntegerOptionKey const	max_nstruct_in_memory ("jd2:max_nstruct_in_memory")
BooleanOptionKey const	sequential_mpi_job_distribution ("jd2:sequential_mpi_job_distribution")
BooleanOptionKey const	grid_ensemble ("jd2:grid_ensemble")
BooleanOptionKey const	seed_ensemble ("jd2:seed_ensemble")
RealVectorOptionKey const	seed_ensemble_weights ("jd2:seed_ensemble_weights")
FileOptionKey const	seed_ensemble_weights_file ("jd2:seed_ensemble_weights_file")
BooleanOptionKey const	HOSTNAME_in_jobname ("jd2:HOSTNAME_in_jobname")
BooleanOptionKey const	parse_script_once_only ("jd2:parse_script_once_only")

Function Documentation

buffer_flush_frequency()

RealOptionKey const jd2::buffer_flush_frequency

(

"jd2:buffer_flush_frequency"

)

buffer_silent_output()

IntegerOptionKey const jd2::buffer_silent_output

(

"jd2:buffer_silent_output"

)

checkpoint_file()

FileOptionKey const jd2::checkpoint_file

(

"jd2:checkpoint_file"

)

dd_parser()

BooleanOptionKey const jd2::dd_parser

(

"jd2:dd_parser"

)

Referenced by main().

delete_old_poses()

BooleanOptionKey const jd2::delete_old_poses

(

"jd2:delete_old_poses"

)

enzdes_out()

BooleanOptionKey const jd2::enzdes_out

(

"jd2:enzdes_out"

)

failed_job_exception()

BooleanOptionKey const jd2::failed_job_exception

(

"jd2:failed_job_exception"

)

generic_job_name()

StringOptionKey const jd2::generic_job_name

(

"jd2:generic_job_name"

)

grid_ensemble()

BooleanOptionKey const jd2::grid_ensemble

(

"jd2:grid_ensemble"

)

HOSTNAME_in_jobname()

BooleanOptionKey const jd2::HOSTNAME_in_jobname

(

"jd2:HOSTNAME_in_jobname"

)

input_empty_pose()

BooleanOptionKey const jd2::input_empty_pose

(

"jd2:input_empty_pose"

)

jd2()

BooleanOptionKey const jd2::jd2

(

"jd2"

)

lazy_silent_file_reader()

BooleanOptionKey const jd2::lazy_silent_file_reader

(

"jd2:lazy_silent_file_reader"

)

max_nstruct_in_memory()

IntegerOptionKey const jd2::max_nstruct_in_memory

(

"jd2:max_nstruct_in_memory"

)

mpi_fast_nonblocking_output()

BooleanOptionKey const jd2::mpi_fast_nonblocking_output

(

"jd2:mpi_fast_nonblocking_output"

)

mpi_file_buf_job_distributor()

BooleanOptionKey const jd2::mpi_file_buf_job_distributor

(

"jd2:mpi_file_buf_job_distributor"

)

mpi_filebuf_jobdistributor()

BooleanOptionKey const jd2::mpi_filebuf_jobdistributor

(

"jd2:mpi_filebuf_jobdistributor"

)

mpi_nowait_for_remaining_jobs()

BooleanOptionKey const jd2::mpi_nowait_for_remaining_jobs

(

"jd2:mpi_nowait_for_remaining_jobs"

)

mpi_timeout_factor()

RealOptionKey const jd2::mpi_timeout_factor

(

"jd2:mpi_timeout_factor"

)

mpi_work_partition_job_distributor()

BooleanOptionKey const jd2::mpi_work_partition_job_distributor

(

"jd2:mpi_work_partition_job_distributor"

)

no_output()

BooleanOptionKey const jd2::no_output

(

"jd2:no_output"

)

Referenced by main().

ntrials()

IntegerOptionKey const jd2::ntrials

(

"jd2:ntrials"

)

Referenced by main().

parse_script_once_only()

BooleanOptionKey const jd2::parse_script_once_only

(

"jd2:parse_script_once_only"

)

pose_input_stream()

BooleanOptionKey const jd2::pose_input_stream

(

"jd2:pose_input_stream"

)

seed_ensemble()

BooleanOptionKey const jd2::seed_ensemble

(

"jd2:seed_ensemble"

)

seed_ensemble_weights()

RealVectorOptionKey const jd2::seed_ensemble_weights

(

"jd2:seed_ensemble_weights"

)

seed_ensemble_weights_file()

FileOptionKey const jd2::seed_ensemble_weights_file

(

"jd2:seed_ensemble_weights_file"

)

sequential_mpi_job_distribution()

BooleanOptionKey const jd2::sequential_mpi_job_distribution

(

"jd2:sequential_mpi_job_distribution"

)